| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1729 |
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| Symbol | |
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| ID | 3934177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1720383 |
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| End bp | 1721372 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637904080 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_509671 |
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| Protein GI | 89054220 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0391409 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.483155 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTCA CCAAACTGGG CGCACTCACG CTGTCCACTG CCATCGTTGC AACCTCCGCC
TTCGCGCAGG ACGTCGACCG CACCGGCTGG CCCGAAAACT TCACCCTCGG CACCGCAGGC
CAGGGCGGCA CCTACTTTGC CTACGGCTCC GGTTGGGCCA ACCTGGTGGC GGACGAATTG
GGCATTTCCG GCGCGGGTGA AATCACCGGC GGACCCATGC AGAACATGGC GCTGGTCCAC
ACCGGCGAGG CGCAGTTCGG CATGACCACG ATGGGCCCGG CGGCGGAAAG CCTGCAAGGC
ACCAACCCCA TCGCCCCCGG CCTGCAAATG ACCGGTGCCT GCGCGATGTT CCCGATGTAC
CAGACGCCCT TCGCGATCAC CGTGCTGGCG TCCTCGGGCA TCGAGGCAAT TTCCGATATC
CCGGACGGTG CACGGATCGG CTTTGGCCCC GCAGGCTCCA CCTCGGACAC CTATTTCCCG
CGCATGATGG AAACCCTCGG CATCGAGTTT GACCGTCGCA ACGGCAACTG GACCGACCTG
GGTGGTCAGG TGCAGGACGG CCTTCTGGAC GTCATCGCCT TTGCAGCCGG TGTGCCGACA
CCTGCCGTGA GCCAGCTGGA AGTGCAGACC GACATCAACT TCATCGCCTT CACCGAAGAA
GAGCAGGCGA CGATCATGGA AACGTTCCCC GTATCGCCCT TCGTGATCCC GGCGGGCACC
TATGAGACGC TGACCGAAGA CGCGAACTCC GTATCGATGT GGAACTTCGC CATCGCCAAT
TGCGAGCTGC CCGACAGCTT CGTCTATTCC GTCGTGGACA TCATCATGTC CGACAACGAG
CGGATGATGG CGATCCACGG CGCGGCACGC TCCACGCTGC CAGAGAACTG GGACAAGAAC
GAAGTCCTGA TGTGGCACCC CGGCGCGGCC CAGTGGTTCA TTGAGAATGC CGGTGCGACC
ATCGCCGACG ACATGATCCA CGGCGGCTGA
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| Protein sequence | MTFTKLGALT LSTAIVATSA FAQDVDRTGW PENFTLGTAG QGGTYFAYGS GWANLVADEL
GISGAGEITG GPMQNMALVH TGEAQFGMTT MGPAAESLQG TNPIAPGLQM TGACAMFPMY
QTPFAITVLA SSGIEAISDI PDGARIGFGP AGSTSDTYFP RMMETLGIEF DRRNGNWTDL
GGQVQDGLLD VIAFAAGVPT PAVSQLEVQT DINFIAFTEE EQATIMETFP VSPFVIPAGT
YETLTEDANS VSMWNFAIAN CELPDSFVYS VVDIIMSDNE RMMAIHGAAR STLPENWDKN
EVLMWHPGAA QWFIENAGAT IADDMIHGG
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