| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1501 |
|---|
| Symbol | |
|---|
| ID | 3933948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1471275 |
|---|
| End bp | 1472318 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637903851 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_509443 |
|---|
| Protein GI | 89053992 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR03415] choline ABC transporter, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.183759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG CCGTGTCCTT CCGCGATGTC TGCATCATGT TCGGCCCCCG CCCGGCCCGC
GCCCTGAGCC TTGCGGATGA AGGCGGCACA AGGTCCGAGA TTCAATCCGC GACGGAGCAT
GTTCTGGGCG TTCACGATTG TTCGCTGGAT GTGGAGGAGG GGGAGATCCT CGTTCTCATG
GGCCTGTCTG GCTCCGGCAA ATCCACGCTT TTGCGCGCGG TTAACGGCCT TAACCCTGTG
GCCCGGGGAC AGGTCGAAGT GCGCGACGGC GATTGGTCCT GCACGCTGCC CGGCGCCTCG
GTCGCGGACC TGCGTTACCT GCGGCAGAAC TGCGTTTCCA TGGTCTTTCA ACAGTTTGGC
CTGCTGCCAT GGCGCACAGT GCGCGAGAAT GTCGGCCTTG GGCTGGAGCT TGCGGGGCAA
TCGGCTACGG CCCGGGCAGA GGCGGTGGAC AAGCAATTGG CGCTCGTGAA CCTCAGCGAA
TGGGGGGATC GCAAGGTGGG CGAATTGTCT GGCGGCATGC AGCAGCGCGT TGGCCTGGCC
CGCGCCTTCG TCACCGACGC CCCGATCCTT CTGATGGATG AGCCGTTCTC CGCCCTTGAT
CCCCTGATCC GTTCCAAACT GCAGGACGAG CTGCTGGACC TCCAGCGCGA CCTGAAACGC
ACCATCATCT TCGTCAGCCA TGACCTGGAT GAGGCGTTCA AGATCGGCAA CCGCATCGCG
ATCCTGGAAG GGGGCCGCAT CGTGCAGATC GGCACGCCCC GGCAGATCTT CTCGGAACCC
GCGACGGGCT ACGTGGCCGA ATTCGTCTCT AACATGAACC CCTTAGGCGT TCTGACCGCA
CGCGACGTCA TGCAAGACGT GCCCACCGAC GCGCCCCGGA TCCCGGTGGA AATGCCCGTC
AAAGACATCC TTGCGCGATT TGCGGACACG CCTGCGCCCC TCGCCGTTGA GGAAGACGGA
GAGGTCATCG GCACCGTAAC GACCGACAGC GTCGCCGCGC GTCTCGGCAC GCCGGAGGCC
GGGCATTCAA CCTCTCCGGC TTAG
|
|---|
| Protein sequence | MSTAVSFRDV CIMFGPRPAR ALSLADEGGT RSEIQSATEH VLGVHDCSLD VEEGEILVLM
GLSGSGKSTL LRAVNGLNPV ARGQVEVRDG DWSCTLPGAS VADLRYLRQN CVSMVFQQFG
LLPWRTVREN VGLGLELAGQ SATARAEAVD KQLALVNLSE WGDRKVGELS GGMQQRVGLA
RAFVTDAPIL LMDEPFSALD PLIRSKLQDE LLDLQRDLKR TIIFVSHDLD EAFKIGNRIA
ILEGGRIVQI GTPRQIFSEP ATGYVAEFVS NMNPLGVLTA RDVMQDVPTD APRIPVEMPV
KDILARFADT PAPLAVEEDG EVIGTVTTDS VAARLGTPEA GHSTSPA
|
|---|
| |