| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1463 |
|---|
| Symbol | |
|---|
| ID | 3933910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1432134 |
|---|
| End bp | 1433150 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637903813 |
|---|
| Product | ribose binding protein of ABC transporter |
|---|
| Protein accession | YP_509405 |
|---|
| Protein GI | 89053954 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0142932 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAC TTCTGACAAC AGCTGCTGCG CTGGCCATGA TGGCCCCCGC CGCCTACGCC
GACGGTCACG CGGCGTATAC TATCGGCGTA TCCAACACGG TACAGGGCAA CGGGTGGCGC
GAGCAGATGA TTTGCGCCAT GCGCGCCCAG GCTGCCGCTG AGGGCGATGT CGAGGGATTG
ATCGTTGCGC ATCGCAATAC CGACGCCGCG GGGCAGCTGG AGGACCTGAA CAACCTGATC
GAGGCGGGCG TTGACGCCAT CGTTCTGAAC CCTGCAAACC CCGAAGCGCT GAACTCCGCT
CTGGATGCGG CGATTGCCGC AGGGATCGTT GTGGTCGCGG TGGACGCCGG TGTGACAGCT
GAAGGCGCCT ACATCTTGTC TAACAACCAG GAAGAATACG CATATCTTGG TGCGCGTTGG
TTGTTTGAGC AGATCGGTGG CGAGGGCGAC GTCGTCTACA TGCGTGGGAT CGCAGGCGTC
TCGGCCGATA CCGACCGCGA CAACGGGTTT CAGCGCGCGT TGGCGGAGTA TCCGAACGTT
AACGTCATTC ATGAGGTTTT CACCGGTTGG CAACAGGACC AGGGCAAGCA GCAGATGTTT
GATTTTCTGG CCACAGGCAT CCCCTTCGAT GGGGTCTGGA CGTCTGGGAT CGACAACGTG
ATTGTAGATG CCTTTGTCGA GTCCGGTGCG CCGCTGGTGC CGATTGTTGG GGCCGACAAT
GCAGGTTTTG TGCAGTATCT TGCCGAGACC GAGGGCCTTG AAGGCGCAGC GGTGACCAAC
CCCGGATCCG TCGGCGGGGC GGGCATCGCC TTGGCGGTCG ACATCCTGAA TGGCGACGCG
CCCGATGAGA CGACGGTGCT GGTGGACCCA GTTCTTTGGG AAAATACGAC CGCCGAGGGG
CAGGAAGTCA TTGCCGGTGC TCTGAATCCC GATCTGGACC CCGAATGGCC GGTGTCTGTG
TCTATCCCGG GCTGGACCGA CTACTCCATG GCCGACATCA TCGCCTGCGA AGGCTGA
|
|---|
| Protein sequence | MKRLLTTAAA LAMMAPAAYA DGHAAYTIGV SNTVQGNGWR EQMICAMRAQ AAAEGDVEGL
IVAHRNTDAA GQLEDLNNLI EAGVDAIVLN PANPEALNSA LDAAIAAGIV VVAVDAGVTA
EGAYILSNNQ EEYAYLGARW LFEQIGGEGD VVYMRGIAGV SADTDRDNGF QRALAEYPNV
NVIHEVFTGW QQDQGKQQMF DFLATGIPFD GVWTSGIDNV IVDAFVESGA PLVPIVGADN
AGFVQYLAET EGLEGAAVTN PGSVGGAGIA LAVDILNGDA PDETTVLVDP VLWENTTAEG
QEVIAGALNP DLDPEWPVSV SIPGWTDYSM ADIIACEG
|
|---|
| |