Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_1310 |
Symbol | |
ID | 3933757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 1269649 |
End bp | 1270788 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637903660 |
Product | secretion protein HlyD |
Protein accession | YP_509252 |
Protein GI | 89053801 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.673983 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCAATC AAACGAGTAG TGTCTGGTGG CGGCGCGCGT TACGTCAGCT CGTAACAATC AGCGTTACGT CGATTGTGCT CATAGGCGCT GGCGCTGCAG TGTTCGTCGG CTCAACGCAG CTTGCCAATC GGGCCGAGGC CACAGCAGTG ACCGAAATCG CCGACCCTAT ACCGGTTCAG GTCGCGTCGC TTGATCTGTC GGACGGGTTC GATATCCCGC GTCAGTTTGT TGGACAGGTC GAGGCCGCTG CGAGTGTCGT TCTTTCGTTC GAACTGGCGG GGCGGCTTAG CGACCTGACA GTACAGGAGG GCGGTGAAGT CGAGGCCGGC ACGGTTCTGG CCCGGCTGGA TACATCACTG CTGGAGACCG AGCGGACACG CCTTGAAGCA AGCCGATCAG CCACCCGCGC ACAGCTGGAG CTTGCCGAAA ACCGGTTGAT CCGCGCTCAG GCGCTGCTGG ACGACGGACA CATCAGCCAG GAAGCTCTGG ATCAGGCGCT GGCCACGCGG GACGAATTGT CTGGGCGCAT CATGGAAATT GAAGCGGCAA TTAATGCAGT CGCCATCAAC CTAGAGAAAT CTGAACTGCG CGCACCATTC TATGGCCGTG TCGGCGTGCG CAACGTGGAT GGGGGTGAGA CATTGTCCGC CGGAGCCCCT GTTTTGACGT TGATCGAAAC CGCCGCACCC GAGGTTCGGG TTGGCCTGCC GCTTTCTGTC GATGCGGCGC GCCTTGAGAA CGTATCCATC GAAATTGGCG GCGAGAGCTA TCCCGCACGA TTGGCGCAGG TTCGCCCCGA CATTGATACT GTGACGCGCA CGCGCACGGC CCTTTTCACG CTGCTGACTG ACGACACGCC AACCTTTGGT CAGACGGCCA CGTTGACGCT GGGGACCCGC GTTGAGGCTC CGGGCACCTG GGTGCCGCTT GACGCGTTGC AAGAGGGGAT CGGTGGAACC TGGAACCTTC TGGTGGTCGA AGAGGAGGTG GTGCGGGTCG CCATGGTCGA AGTGCGCCAT GCAGATGAGA CACGCGCCTA TGTCACCGGC ACGTTCTCGC CCGGCACACA GATGATCCAG ACCGGCGCAC ACCGGGTTGT GCCTGGCCAG GTTATCCAAA CTCTGACCGC GGCGGAGTAA
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Protein sequence | MVNQTSSVWW RRALRQLVTI SVTSIVLIGA GAAVFVGSTQ LANRAEATAV TEIADPIPVQ VASLDLSDGF DIPRQFVGQV EAAASVVLSF ELAGRLSDLT VQEGGEVEAG TVLARLDTSL LETERTRLEA SRSATRAQLE LAENRLIRAQ ALLDDGHISQ EALDQALATR DELSGRIMEI EAAINAVAIN LEKSELRAPF YGRVGVRNVD GGETLSAGAP VLTLIETAAP EVRVGLPLSV DAARLENVSI EIGGESYPAR LAQVRPDIDT VTRTRTALFT LLTDDTPTFG QTATLTLGTR VEAPGTWVPL DALQEGIGGT WNLLVVEEEV VRVAMVEVRH ADETRAYVTG TFSPGTQMIQ TGAHRVVPGQ VIQTLTAAE
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