| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1294 |
|---|
| Symbol | |
|---|
| ID | 3933741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 1254777 |
|---|
| End bp | 1255535 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637903644 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_509236 |
|---|
| Protein GI | 89053785 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0435473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAG ATCACCCATC GGCGTACTGC TTTTTTCAAG ATCTTGCGCC GCGTCCCCCG
TTGGACGCGG CGTTTGATCG TGACTACCTG CTGTATGCTA TCCGCGGCGC GTTGCGCGTT
TCCGTCGCTG GGGAAAGTTG GCTGCTACCG CCATCCTTTG CGGCATGGTT GCCCGCGAAC
ACGCCAATTT CAGTTGATAT CGACAAACCT GTCACGACCT GCTCGGTCCT GGCGCGACCG
GGGCTTTGCA CAGGTTTGCC CGAAAAAGCA TGCGTGTTTC AGATGTCCCC AATGGCCCGA
CAGATGATCC ATTATTGCAA AGACTGGGGG CCAGATGCCG CACACCCAGC GCAGGCAGAA
GGGTTCTTCC TTGCGTTGCT GCATGTTTGC GCAGATCTGG CGGTCAAATC CGTTGATGTG
AAACGCCCAA CAGCGACGGA TCCGGTTTTG CGGAAGGCCA TCGACATCAC TGAGGCGCAT
CTTGCGCAGG CGATCACCGC AAACGAGATT GCGCGAAAGG TCAATCTATC TGAGCGCAGC
ATGCAGCGGC ATTTTCAAAT GGATGTTGGC ATGACGTGGT CACAAACGCT GACCCAGCTG
CGGATGATCC ATGCGGTCGC ACTTTTGGCC GAAGGTAAAT TGTCGATAAT CCAGATTGCG
GGGTACACGG GGTTTCAATC GCTCAGCGCA TTCAACCGCG CTTTTCGAAC TTTTGCCGCA
ACCACGCCGA CCAAGTTCCG CAAAGCGCTG CTAGACTGA
|
|---|
| Protein sequence | MTTDHPSAYC FFQDLAPRPP LDAAFDRDYL LYAIRGALRV SVAGESWLLP PSFAAWLPAN
TPISVDIDKP VTTCSVLARP GLCTGLPEKA CVFQMSPMAR QMIHYCKDWG PDAAHPAQAE
GFFLALLHVC ADLAVKSVDV KRPTATDPVL RKAIDITEAH LAQAITANEI ARKVNLSERS
MQRHFQMDVG MTWSQTLTQL RMIHAVALLA EGKLSIIQIA GYTGFQSLSA FNRAFRTFAA
TTPTKFRKAL LD
|
|---|
| |