| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1269 |
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| Symbol | |
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| ID | 3933715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1229302 |
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| End bp | 1230975 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637903618 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_509211 |
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| Protein GI | 89053760 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.347255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.330105 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACG CCACCGGCCC CGACCAGTTC ACCGCACCCA CACCCGACAA CGCCCTGCGC
AATGCCGAGC GCACCGATAC CGGCCCGGTC CTTGCCGCCG ATGGAACACC CCTGAAGCGC
AGCCTTTCGA AGGCCTTGCG GGCGCAGAAG CTGCGCGCGC TGATGCTGAT CGCGCCGCTG
CTGATTTTCA TCATGGTCGC CTTCATCGCG CCCATCGTCG ATATGCTCTT CCGCTCCGTC
GAGAACCAGA TCACGTCCGA GACGCTGCCG CGCACCGTTG TGGCGTTGGA AAACTGGGAC
CCGGAAGGCC TGCCCGACGA CGACACCTAT GCCGCGCTGA CCTATGATTT TGTCGAAGCG
GTGGAGCGAC GCATCCACAC ACGCCTTGGC TCTCGCCTGA ATTACGAGAC GACGGGAATG
TCGTCGCTGT TTCGCCGCTC GGGCCGGGGG GCCGATGATA TTGGCGAAGA CTATGCCGAC
CAGTTTCACG ACCTGAACCC CGCCTGGGAA GAGGCCGCCA CATGGGCATC CCTGATGGGC
GCGCCCGATT GGCTTGAGGA TGCAAGCGCT GCGGACGGCG CGGGCCTGCC ATTCCGCCTG
TCTGTTGCCG CGATGGAAAC CCTGCCCGAG ACCGCAGACG CTTACCGCAG TTTCGCGCGG
ACCGTGCAGC AGGAAGACAA CGACAACCCC ACGGCGGAAG AGCCCTGGAA CTCCGTCTAC
CTGGCCCTTT ACAGGGACCT GAGCCGCGTC GATGTGTCAG GCTATGACGG ACCGCAAGCT
GATCTGTTGG CCGAGGCGGC AGCCGCTGTA GATGGATTTG AAGGCCTGTC CCCGCGGGAG
GCTTGGCTGG AGGTGAACGA GGATTGGGGC GATGTCGACG TTTGGGCCAC GATTGAAGCG
TTCTCGGACC CCTACACCGC TGGATATTTC CTGACGTCGA TTGACCTGCA ACTGACCCCT
CAGGGCATCG AATCCCAGCC GGAAGAGCAG CAAATCTATG TGCTGTTGTT CCAGCGCACG
ATCTTCATGT CGGGCATGAT TACACTGATG TGCGTGCTCT TGGGCTACCC GATTGCCTAC
CTGCTGTCGA ACCTGCCGTC GAAGTCGTCC AACCTGCTGC TGATCCTTGT TTTGCTGCCC
TTCTGGACGT CACTTCTGGT GCGGACCAGC GCGTGGAAAG TGCTTCTGCA ACAACAAGGT
GTGATCAACG ATATCCTTGT GTGGGTCGGT ATTGTGGCCG ATGACAACCG CCTGGCGCTG
ATCAACAACC AGCTTGGCAC GATCATCGCG ATGACACATA TCCTGCTGCC GTTCATGATC
CTGCCGCTGT TCTCGGTCAT GAAGACTATC CCGCCAAGCT ATGTGCGGGC GGCGAAATCG
CTGGGGGCCA CGAACTTCAC CGCCTTCCGG CGCGTGTATT TCCCGCAGAG CATTCCGGGG
ATCGGGGCGG GGTGTATCCT CGTCTTCATC CTGGCCATCG GCTACTATAT TACGCCGGAA
CTTGTGGGCG GACGGACCGG CACGTTCATC TCCAACCGGA TCGCCTACCA CATCTCGTCC
AGCCTGAACT GGGGTCTGGC GGCGGCGCTT GGCTCGCTCC TTCTGGCGCT CGTGCTGGTT
CTCTACTGGG TCTACGACCG GATCGTGGGC ATCGACAACG TGAAGCTGGG ATAG
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| Protein sequence | MSDATGPDQF TAPTPDNALR NAERTDTGPV LAADGTPLKR SLSKALRAQK LRALMLIAPL
LIFIMVAFIA PIVDMLFRSV ENQITSETLP RTVVALENWD PEGLPDDDTY AALTYDFVEA
VERRIHTRLG SRLNYETTGM SSLFRRSGRG ADDIGEDYAD QFHDLNPAWE EAATWASLMG
APDWLEDASA ADGAGLPFRL SVAAMETLPE TADAYRSFAR TVQQEDNDNP TAEEPWNSVY
LALYRDLSRV DVSGYDGPQA DLLAEAAAAV DGFEGLSPRE AWLEVNEDWG DVDVWATIEA
FSDPYTAGYF LTSIDLQLTP QGIESQPEEQ QIYVLLFQRT IFMSGMITLM CVLLGYPIAY
LLSNLPSKSS NLLLILVLLP FWTSLLVRTS AWKVLLQQQG VINDILVWVG IVADDNRLAL
INNQLGTIIA MTHILLPFMI LPLFSVMKTI PPSYVRAAKS LGATNFTAFR RVYFPQSIPG
IGAGCILVFI LAIGYYITPE LVGGRTGTFI SNRIAYHISS SLNWGLAAAL GSLLLALVLV
LYWVYDRIVG IDNVKLG
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