| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1254 |
|---|
| Symbol | |
|---|
| ID | 3933699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1209158 |
|---|
| End bp | 1209676 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637903602 |
|---|
| Product | membrane protein-like |
|---|
| Protein accession | YP_509196 |
|---|
| Protein GI | 89053745 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5395] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.336737 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCG CCCTGTTTCT CAACATCGCG CCATTGCTCG ATGCAGACCT CCCGATCCAG
ATCCATGTGG CCTTCGCGTT GACCTCCATT CCGGTCGGGG CGTTCGTGGT CTTGCGCCGC
AAACGGGACC AGCTCCATCG GATCTGCGGC TACATCTGGG TGCTTGCGAT GGGCATCGTG
GCGCTGTCGG GGTTCTGGAT CCATACATTC CCGATCATCG GGCCGTTCAA CCCGATCCAT
CTGTTTTCCG TCTGGACCCT CTGGTCGCTC TGGGTGGGTG TCCGGCACGC GGTCCGGGGC
CGCGTCCAGG ACCATCAAGC GACGTTTCGC AGCCTCTATT GGTATGGGCT GCTGGTGGCG
GGAACATTCA CCTTCCTGCC CGGACGCCGG ATGAACCGGG TGGTGTTTGG CGAGGCCCCC
GATCTGAGCC TGTGGTTCAT CGGGGCGGTC GGAGTGGGGA TGGCCGGGGT CTATCTGTGG
CGTCGCAAGA CCCGCCAAAG TGACCTGAAT GCAGCATAA
|
|---|
| Protein sequence | MPTALFLNIA PLLDADLPIQ IHVAFALTSI PVGAFVVLRR KRDQLHRICG YIWVLAMGIV
ALSGFWIHTF PIIGPFNPIH LFSVWTLWSL WVGVRHAVRG RVQDHQATFR SLYWYGLLVA
GTFTFLPGRR MNRVVFGEAP DLSLWFIGAV GVGMAGVYLW RRKTRQSDLN AA
|
|---|
| |