| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1085 |
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| Symbol | secF |
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| ID | 3933529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1049563 |
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| End bp | 1050549 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637903433 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_509027 |
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| Protein GI | 89053576 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.161965 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTTC GCCTGGTCCC GCAAGAGACG TCCTTCGATT TCTTCAAATA CGCCCGCGTC
ACCTTTGGCG CGTCCATCGT GGCGGTCATT GCCTCGCTCG TGATCTGGCT GAGCGTCGGC
CTGAATTTCG GCATCGACTT TCTGGGCGGC ACGACGATCC GCACCGACAG CACGGTGCAG
GTGGAGGTGG CCGAATACCG CGCCGCGCTG GAGCCGTTGG GCCTGGGCGA TGTGGTGATC
TCGGAAGTGT TCGACCCGAA CTTCGCGGCG GACCAGCATG TGGTCACGGT GCGCATTCAG
GCCCAGGAGG GCGCGGAGGC GGTGACGCCG GAGATTATTC TGGCGATTGA GACGGCCCTG
CTGGAGGCCG TGGACCCGGC GATGACCTTT CCATCGGTGG AATCCGTGGG TCCCAAAGTT
TCGGGTGAGT TGATCCAGAC GGCGATCATC GCGGTTCTAG CGTCGCTTGG CGCGATCCTC
GTCTACATCT GGCTGCGGTT CGAATGGCAG TTCTCGGTCG GCGCCGTGGC GGCTCTGATC
CACGACATCA TCCTGACCAT CGGCGTCTTC AGCCTGTTCC AGATCCGCTT TGACCTGGCC
ACCATTGCGG CCCTTCTGAC CATCGTGGGC TATTCGATCA ACGACACCGT GGTGATCTTC
GACCGCCTGC GCGAGAACCT GATCAAATAT AAGCAGAAGG CCCTGCGCGA CGTCATGAAC
CTGTCCGCGA ACGAGACGCT GTCGCGAACC TTGATGACCT CCGGCACCAC CCTGATCGCG
CTGATCGCGC TGATCGTTCT GGGTGGCGAC GTGATCCGGG GCTTCGTCTT TGCCATTGCC
TGGGGCGTGG TCGTCGGGAC CTATTCCTCG ATCTACGTGG CCAAGAATGT GGTCCTGATG
ATCGGCGTGA AGCGCGACTG GTCCAAGCCC ACCGATGGCG GCGCGGGCGG CCCCGGGGGC
ACGCAATTCG CCAACGTCGA TGCCTGA
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| Protein sequence | MRLRLVPQET SFDFFKYARV TFGASIVAVI ASLVIWLSVG LNFGIDFLGG TTIRTDSTVQ
VEVAEYRAAL EPLGLGDVVI SEVFDPNFAA DQHVVTVRIQ AQEGAEAVTP EIILAIETAL
LEAVDPAMTF PSVESVGPKV SGELIQTAII AVLASLGAIL VYIWLRFEWQ FSVGAVAALI
HDIILTIGVF SLFQIRFDLA TIAALLTIVG YSINDTVVIF DRLRENLIKY KQKALRDVMN
LSANETLSRT LMTSGTTLIA LIALIVLGGD VIRGFVFAIA WGVVVGTYSS IYVAKNVVLM
IGVKRDWSKP TDGGAGGPGG TQFANVDA
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