| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0992 |
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| Symbol | |
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| ID | 3933436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 949860 |
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| End bp | 950840 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637903340 |
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| Product | type II secretion system protein |
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| Protein accession | YP_508934 |
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| Protein GI | 89053483 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.236675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.765371 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTTC TCACCGACCT TTTCGACAGT GCCAACGCGT TCCTGATCGA CCAATTGGGA
GAGCTTGGTC CCCTCATCGC CGTTGGTGGC CTTGGGGTTC TGCTGTGCCT CGTGGCCCTG
CCGACGCTGA TGAAGAAGCA GAAAGACCCG TACAAAAAAC TACGGGACGA ACGTGGTGGC
ACGGGCAAAG CGAAGGGCAA GAAAGATGGC CTGCGGCTGA GTAGCAAGAA TGAGAAGTTG
GAACGCTTCG CGCAATACCT GGAACCCCAG GATGAGCAGG AGCTGTCGGC CACTCAGCTG
CAGATGATCC GCGCAGGCTA CCGTGCGAAG TCCTCGATCC AGATGTTCAA CTTCGCCAAA
CTTGCCCTCG CGCTCGGGGG GTTGCTGCTC GGCACGCTTT ACGTGTTGAT CACCGGCGGT
GGCGGCTCGG CGCAGAACTC CATCCTGTTC GTGATCGTCC CCGGTGTCGT GGGCTATTAT
GCGCCCAAAT ACTGGATCAC GAAGCGGGCG CAGACACGCG AAGACCAGAT CAATTCCGGC
TTTCCAGACG CGCTCGACCT GATGCTCGTC TGCGTGGAGG CGGGCCAGTC TTTGGACCAG
GCCATCATCA AGGTCGCCAA TGAGATCAAG ACCTCCTATC CCCCTCTGGC CGAGGAGTTC
GAGATCGTCT CCTATGAAAT GAAGGCCGGT AAGGACAAGA CCAAAGTCCT GCGCGACATG
GGCGAACGCG TTGGCATTCA GGACGTGAAC TCCTTCATCA CGACTCTGAT CCAGTCCTCC
ACCTTCGGCA CCTCGGTGGC TGAGGCGCTG AAAGTCTACT CCGATGAAAT GCGCGACAAA
CGCATTAGCC GGGCCGAGGA AAAGGCCAAT AAGCTGCCGA CAAAGCTGAC GCTGTTCACC
ATGCTGTTTT GTGTGCCACC GCTTCTGGTG ATCCTGATCG GACCATCAAT CTATGGCATC
GCGACCGATC TTGCGCGTTG A
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| Protein sequence | MEFLTDLFDS ANAFLIDQLG ELGPLIAVGG LGVLLCLVAL PTLMKKQKDP YKKLRDERGG
TGKAKGKKDG LRLSSKNEKL ERFAQYLEPQ DEQELSATQL QMIRAGYRAK SSIQMFNFAK
LALALGGLLL GTLYVLITGG GGSAQNSILF VIVPGVVGYY APKYWITKRA QTREDQINSG
FPDALDLMLV CVEAGQSLDQ AIIKVANEIK TSYPPLAEEF EIVSYEMKAG KDKTKVLRDM
GERVGIQDVN SFITTLIQSS TFGTSVAEAL KVYSDEMRDK RISRAEEKAN KLPTKLTLFT
MLFCVPPLLV ILIGPSIYGI ATDLAR
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