| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0685 |
|---|
| Symbol | |
|---|
| ID | 3933128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 656236 |
|---|
| End bp | 658995 |
|---|
| Gene Length | 2760 bp |
|---|
| Protein Length | 919 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637903032 |
|---|
| Product | double-transmembrane region-like |
|---|
| Protein accession | YP_508627 |
|---|
| Protein GI | 89053176 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02226] N-terminal double-transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.621898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.74897 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCG CCCTGGGGTT CGCCACGCCG CTTCTTTTGC TGGCGCTGAT TGCCTTGCCG
CTGCTGTGGT GGCTGCTGCG TGCCGTGCCG CCCGCACCGA TCAAGCGGCG CTTTCCGGGG
ATCGCGCTGC TTCTGGGCCT CACCGACGAT GAAAGCCAGA CGGACAAGAC GCCCTGGTGG
TTGTTGCTCC TGCGGATGGC TGCGATTGCA GCGGCGATCA TCGGCTTTGC CGGGCCGGTT
CTGAACCCGC AGGAGGACCG CGCAGCAGGC GATGGCCCGC TCCTGATCGT GATGGACAGC
TCCTGGGCGT CGGCACGGGA CTGGGACGCG CGCCTTGATC GGGTGCAGGT GTTGCTGGAT
GACGCCGCGC GCACGGGCCG TGAAGTCGCG GTCGTGCAAT TGACCGATCT GCCCCCCGGT
CCGCCATCGT TCCAGGCCGC CAACGCCTGG GCCCCGCGCG TGCCCACTCT GGAACCCGCG
CCCTATGACC CGGATATGGA GGCCGCCGCC CTTTGGGCCG CGTCGCTGGA CAGCGGGGTG
GAGGTGTTCT GGTTCTCCGA CGGGCTCGCC TACGCAGCCC GCCCCGACGT CGCCGATGCC
TTCGCCGATA TCGGCACGCT CTCGGTATTT CAGGGTGACC GGGACCTGAT CGCGCTGGCC
CCGCCCCGGT TTGAGGACGG CATGGTGCGC GGGGACCTCT CGCGCCTCGG CACGACGACC
CCGCGGGACG TCACGATTGT GGCCCACGGC CTCGACCCGG CGGGCCTGCC CCGCGACCTG
GCGCGGGGGA CCGCCACCTT TGATGCCGGT GAAATAGTGG CTCAGGTCGA ATTCGACCTC
CCGCCCGAGC TGCGCAACAG GATCACCCGG TTTGAAATCT CGGCCGAGCG TCATGCGGGC
GCAATCGCGT TGACCGATGA TGCCCTGCAG CGCCGCCAGG TCGCCCTGAT CTCTGCGGGG
GCCGATGATG AACAACAGGC GCTTCTCTCG CCACTGCATT ATCTGCGCCA GGCGCTGGAG
CCGACGGCGG ACCTGATGGA AGGCGCGCTC AGCGATATCC TGTTGGCCAG CCCCGACGTG
ATCATGCTGG CCGATATCGC CACGTTGTCG GAGGAAGAAG AGGCGGGCCT GACCGCTTGG
GTGGAAAACG GCGGCCTTCT GGTGCGCTTT GCCGGTCCCC GCATGGCCGC CTCTGACATC
GCCCGTGATG ATGTCGGGCC GCTGATGCCC GTGCGCCTGC GCGTGGGGGG GCGAACGGTC
GGCGGCGCGA TGTCCTGGGG TGAGCCGAAG GAGCTGCGTC CGTTTGAGGA AGGCTCCCCC
TTCTTCGGCC TGACCATCCC CGATGATGTT CAGGTTACCA GTCAAGTCGT GGCACAGCCC
GACCCGACGC TGAGCGAGCG CACGATTGCG TCCCTCTCCG ATGGCACACC CCTGGTGACG
CGGGCAAATC TGGGTCAGGG CTCCGTTATC CTGTTCCACG TCACGGCCAA TGCGGAATGG
TCGACCCTGC CGCTCTCGGG TCTCTTCGTG CAGATGCTGG AACGTCTGGC CATTTCCACC
CGCCCCGTTG CGCCGGAGGC GGCGGACCTG GAAGGCACGA TCTGGACCCC GGAACAGGTG
CTCGACGGCT TCGGCGTGTT GCGCGACGCA GGCACACGCC CGGGCGTGGC GGGCGAAGAT
CTGGCCTCCG CGCCGCTCTC GGCCGACATT TTGCCGGGTC TCTACTCGGG CGACGACCGC
CGCCTTGCGC GCAATGTCAT GGTGCAGCAC GCGGCTTTGG TTGCGGCGGA ATGGCCCGCC
GATGTGCCCG TGGAAGGTAT GTCCGTGACC CTGCCCACCT ATCTGATGGC CAGCTTCCTG
ACCGCCGCGT TGACCCTACT GCTCATCGAT GCGCTCGCGG CCCTTTGGCT CGCCGGACGG
CTCGGTGGTC TCACGCGCAG CGCCGCCGTT CTTGCCGCCG CCCTGATCCT CGCCCCGCAG
GCCGAGGCTC AGATGACCCC CGCCGAAGAA CTTGCCCTTC TCGCCACGTC CGAGGCCACT
CTGGCCTATG TCCTAACCGG TGATCTGGCG GTGGACGAGA CGTCCCGCGC GGGCCTTCAG
GGCCTGTCCA ACACGCTCTA CCAGCGCACC TCGGTGGAGC CCGCGCCGCC CATCGGTGTG
GATCTGGAAC TGGATGAGCT GGCGTTCTTC CCGATGATCT ACTGGCCGAT CACGCCCGAT
CAGGACATCC CGTCGGCCAA CGCCTACCGT CGCCTGAACG ACTATTTGCG GGGCGGTGGC
ATGATCGTGT TCGACACGCG CGACGCCCAT GTCGGCGGCT TCGGCTCCGG CACGCCCGAA
GGGCGGCGGT TGCAGATCAT CGCCGCGCCG CTGGATATTC CGCCGCTGGA ACCGATCCCC
GAAGATCACG TCGTCACCCG CACCTTCTAC CTGTTGCAGG ACTTCCCGGG CCGTCACCTG
TCGCGTGATG TCTGGGTGGA AGCCGCCCCC CCCGATGCCG AACAGATCGA GGGGATGCCT
TTCCGCAACC TCAACGACGG CGTGACACCC GTGGTCATCG GCGGCAATGA CTGGGCCGCC
GCCTGGGCGC AGGATGAACG GGGCAGGCCG CTCTATCCCA TCGGACGCGG CCAGACCGGG
GAACGCCAGC GGGAGATCGC CCTGCGCTTC GGCGTGAACC TCGTGATGCA CGTGCTCAGC
GGCAATTACA AATCGGATCA GGTCCATGTG CCTGCGCTTT TGGACAGGCT GGGGCAATAG
|
|---|
| Protein sequence | MFSALGFATP LLLLALIALP LLWWLLRAVP PAPIKRRFPG IALLLGLTDD ESQTDKTPWW
LLLLRMAAIA AAIIGFAGPV LNPQEDRAAG DGPLLIVMDS SWASARDWDA RLDRVQVLLD
DAARTGREVA VVQLTDLPPG PPSFQAANAW APRVPTLEPA PYDPDMEAAA LWAASLDSGV
EVFWFSDGLA YAARPDVADA FADIGTLSVF QGDRDLIALA PPRFEDGMVR GDLSRLGTTT
PRDVTIVAHG LDPAGLPRDL ARGTATFDAG EIVAQVEFDL PPELRNRITR FEISAERHAG
AIALTDDALQ RRQVALISAG ADDEQQALLS PLHYLRQALE PTADLMEGAL SDILLASPDV
IMLADIATLS EEEEAGLTAW VENGGLLVRF AGPRMAASDI ARDDVGPLMP VRLRVGGRTV
GGAMSWGEPK ELRPFEEGSP FFGLTIPDDV QVTSQVVAQP DPTLSERTIA SLSDGTPLVT
RANLGQGSVI LFHVTANAEW STLPLSGLFV QMLERLAIST RPVAPEAADL EGTIWTPEQV
LDGFGVLRDA GTRPGVAGED LASAPLSADI LPGLYSGDDR RLARNVMVQH AALVAAEWPA
DVPVEGMSVT LPTYLMASFL TAALTLLLID ALAALWLAGR LGGLTRSAAV LAAALILAPQ
AEAQMTPAEE LALLATSEAT LAYVLTGDLA VDETSRAGLQ GLSNTLYQRT SVEPAPPIGV
DLELDELAFF PMIYWPITPD QDIPSANAYR RLNDYLRGGG MIVFDTRDAH VGGFGSGTPE
GRRLQIIAAP LDIPPLEPIP EDHVVTRTFY LLQDFPGRHL SRDVWVEAAP PDAEQIEGMP
FRNLNDGVTP VVIGGNDWAA AWAQDERGRP LYPIGRGQTG ERQREIALRF GVNLVMHVLS
GNYKSDQVHV PALLDRLGQ
|
|---|
| |