| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | JJD26997_1792 |
|---|
| Symbol | truD |
|---|
| ID | 5389420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter jejuni subsp. doylei 269.97 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009707 |
|---|
| Strand | - |
|---|
| Start bp | 1578063 |
|---|
| End bp | 1579181 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640862685 |
|---|
| Product | tRNA pseudouridine synthase D |
|---|
| Protein accession | YP_001398746 |
|---|
| Protein GI | 153951422 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0585] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAG CGGAAGAGAA CACCATTTTT AAGCCTTTGT ATAGTTTAAA ACACAGTTCT
ATTAATGCGT ATTTTAGTAA AAATAGCGAT GATTTTGTAG TGCGTGAAAG GCCTTTATAT
GAATTTAGCG GTAAGGGCGA ACATCTTATT TTACATATCA ATAAAAAAGA TTTAAGCACA
AATGAGGCCT TAAAAATTTT AAGTGAACAA AGCGGAGTAA AAATGCGTGA TTTTGGTTAT
GCAGGGCTTA AAGACAAGCA AGGATCAACC TTTCAATACC TTTCAATACC TAAAAAATTT
GAGAGTTTTT TGTCAAATTT TTCTCATTCT AAACTTAAAA TTTTAGAAAC TTTTACCCAT
GAAAACAAGC TAAGAATAGG GCATTTAAAG GGAAATTCTT TTTTCATACG TTTAAAAAAA
GTGATGCCAA GTGATGCTTT AAAACTAGAA CAAGTTTTGA TGAATTTGGA TAAACAAGGT
TTTGCAAATT ATTTTGGCTA TCAGCGTTTT GGAAAATTTG GGGATAATTA TAAAGAAGGG
CTTGAAATTT TGCGTGGCAA AAAAATGAAA AATATAAAAA TGAAAGAGTT TTTAATCTCA
GCTTTTCAAA GTGATCTTTT TAATCGCTAT TTGAGTAAAA GAGTGGAATT ATCACATTTT
GCAAATGATT TTAGTGAAAA AGAATTGCTT CAAATTTATA AAATTTCTAA AGAAGAAGCT
AAAGAGCTTA AAAAACAAGA ACAATTTTTT AAGCTTTTAA AAGGCGAGGT TTTAGGGCAT
TATCCTTTTG GAAAGTGTTT TTTATGCGAG GATTTGAGTG CTGAGCTTGA GCGTTTTAGA
GCAAGAGATA TTAGCGCCAT GGGACTTTTA ATCGGTACTA AGGCTTATGA AACAGGAGAA
GGTTTGGCTT TAAATTTAGA AAATGAAATT TTTAAAGATG CTTTAGAATT TAAGGCTAAA
ATGCAAGGTT CAAGACGCTT TATGTGGAGG TATTTAGAAG AGTTAAAATG GCGTTATGAT
GAAGAAAAGG CTCATTTTTG TATAGAGTTT TTCTTACAAA AAGGCTCTTA TGCCACTGTA
GTTTTAGAAG AAATTTTGCA TAAAAATTTG CCCGAATGA
|
|---|
| Protein sequence | MNLAEENTIF KPLYSLKHSS INAYFSKNSD DFVVRERPLY EFSGKGEHLI LHINKKDLST
NEALKILSEQ SGVKMRDFGY AGLKDKQGST FQYLSIPKKF ESFLSNFSHS KLKILETFTH
ENKLRIGHLK GNSFFIRLKK VMPSDALKLE QVLMNLDKQG FANYFGYQRF GKFGDNYKEG
LEILRGKKMK NIKMKEFLIS AFQSDLFNRY LSKRVELSHF ANDFSEKELL QIYKISKEEA
KELKKQEQFF KLLKGEVLGH YPFGKCFLCE DLSAELERFR ARDISAMGLL IGTKAYETGE
GLALNLENEI FKDALEFKAK MQGSRRFMWR YLEELKWRYD EEKAHFCIEF FLQKGSYATV
VLEEILHKNL PE
|
|---|
| |