| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_3011 |
|---|
| Symbol | |
|---|
| ID | 8385320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | + |
|---|
| Start bp | 3100309 |
|---|
| End bp | 3101832 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644974089 |
|---|
| Product | replication factor C large subunit |
|---|
| Protein accession | YP_003131905 |
|---|
| Protein GI | 257054072 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.379588 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACT GGACGGAGAT TCATCGTCCT TCGACGCTCG CGGAGGTGCG GGGCAACGAC
AAGGCCCGCG ACGCCCTTCG GGAGTGGGCC GAGTCCTGGC CCGACCACCG CGAGGCAGTC
GTCCTCTATG GCTCGCCGGG CATCGGGAAG ACCTCGGCGG CCCACGCGCT CGCCAACGAC
ATGGACTGGC CGACGATCGA ACTCAACGCC AGCGACTCCC GGACCAAAGA CGTCATCGAG
CAGGTCGCGG GCGAGGCTGC CAAAAGCGGT ACGCTCGCCC AGGGTGGTTC GGGCCGGCGA
CTCGTCATCC TGGACGAGGC CGACAACCTC CACGGCAACG TCGACCGCGG CGGGACGCGG
GCGATCACAT CCCTGGTCAA GGAGGCCCAA CAGCCGATCG TCCTCATCGC CAACGAGTTC
TACGAGATGA GCAAGGGCCT CCGGAACGCC TGCCGGGACA TCGAGTTTCG GGACGTCTCC
ACCCGGTCGA TCGTCCCTGT CCTCCGTGAT ATCTGCCGAC AGGAGGATGT CGGCTTCGAG
AAGGAGGCAC TCCGAAAGAT CGCGGAGATG AACGACGGTG ATCTTCGGGG AGCGATCAAC
GATCTGCAGG CCATCGCGGA GGGCCGGGAC ACGGTGACCG AAGACGACGT CGTGACCAGC
GAACGCGACC GGACAACTGA CATCTTTTCG TTTCTCGATA CCGTCCTGAA GGAAGCAGAC
GCACAGGAAG CCCTCGAAGC GTCCTACGAC GTCGACGAGA CGCCCGACGA CCTCATCTCC
TGGATCGAGG ACAACGTGCC CAAGGACTAC GAGGGCGCGG AACTGGCACG TGCGTATCGG
TCGCTCGCGA ACGCCGACCG GTGGCTCGGC CGGGTGCGAG CCACGCAGAA CTACACCTTT
TGGCGATACG CCTCCGATGC GATGACAGCC GGTGTCGCGG CCGCACGCAG CGGTGAGAAG
GGGGGCTGGA CGCGCTATGG CCCGCCGAGT TACTGGTCGA AACTCGGCCG AACCAGGGGC
GCACGGGACA CGCGTGACGA CGTGGCTCGG GCCATTGCGA CGACCAGCGG CGTCAGCATG
TCCACCGCGC GCCGCGAGGT GTTGCCGTAT CTGGAGACGA TGACCCACCA CTGCAAGAAC
CGCGAGTTGA CGGTTTCGAT GACGGCGGCC TACGATCTCG ACGCCGACCA CGTGGCGTTT
ATCACTGGCA GCGGTGCGGA CACGAACAAG ATCGCTTCGA TCATCGAGGA CGCGGCAGAA
CGCCGGGAAA CGGCCGCCGT CGACGCCTCG GAAGGCGCGT TCGACCCGGG TGAAACCGAC
AGTTCGTCGG CAAGTGGCGA TGAGCAAGGG GACGACCAGG CGGAGAGGGC CGAGGGGGCG
ACGCTTGGAT CCCAGCCGGC GGACGGCGGC GACGATGCTT CCATGGACGA GGCTGCAATG
AGCGCCGAAG ACGAGGAGGG CGCGAGGAGC GGCGAAGAGG AGGATGCCAA CGACCAACAG
ACCGGGCTTG GCGATTTCGT GTAA
|
|---|
| Protein sequence | MTDWTEIHRP STLAEVRGND KARDALREWA ESWPDHREAV VLYGSPGIGK TSAAHALAND
MDWPTIELNA SDSRTKDVIE QVAGEAAKSG TLAQGGSGRR LVILDEADNL HGNVDRGGTR
AITSLVKEAQ QPIVLIANEF YEMSKGLRNA CRDIEFRDVS TRSIVPVLRD ICRQEDVGFE
KEALRKIAEM NDGDLRGAIN DLQAIAEGRD TVTEDDVVTS ERDRTTDIFS FLDTVLKEAD
AQEALEASYD VDETPDDLIS WIEDNVPKDY EGAELARAYR SLANADRWLG RVRATQNYTF
WRYASDAMTA GVAAARSGEK GGWTRYGPPS YWSKLGRTRG ARDTRDDVAR AIATTSGVSM
STARREVLPY LETMTHHCKN RELTVSMTAA YDLDADHVAF ITGSGADTNK IASIIEDAAE
RRETAAVDAS EGAFDPGETD SSSASGDEQG DDQAERAEGA TLGSQPADGG DDASMDEAAM
SAEDEEGARS GEEEDANDQQ TGLGDFV
|
|---|
| |