| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_1486 |
|---|
| Symbol | |
|---|
| ID | 8383765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 1464294 |
|---|
| End bp | 1466795 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 833 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644972549 |
|---|
| Product | Hef nuclease |
|---|
| Protein accession | YP_003130395 |
|---|
| Protein GI | 257052562 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1111] ERCC4-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCTA CTGACGCGTC CGAGGAATCT ATCGATCGCC CGCTGCTCGA GCCCGGCGTC
TTGGAGAACC GGGGCTACCA GATCCAATTG GCCGACGCTG CCGCGGCCGA TCACACGCTG
GTCTGCCTCC CGACCGGGTT GGGCAAGACG ACCGTCAGCC TGCTGGTGAC CGCCGAGCGA
CTCCACGCGG TCGGCGGGAA GTCGCTGCTG CTCGCGCCGA CCAAACCGCT GGTCCAGCAA
CACGCCGATT TCTACCGCGA AGCCCTCACG ATCGACGACG AGGAGATCGT CGTCTTCACG
GGCGAAGTCC GGCCCGACGA CCGCGCCGCG CTGTGGGACG ACGCGACTGT CGTGATCGCC
ACCCCGCAGG TCGTCGAGAA CGACCTCCTC GGTTCGCGGA TCGATCTCTC GCCGGTTACC
CACTGTACGT TCGACGAGTG CCACCGTGCG AGCGGGGAGT ACCCCTACAC CTACATCGCC
GAGCGCTACC ACGAGGACAG CGACGACCCC CTTGTGACGG GCATGAGCGC CTCGCCCGGC
GACGACGAGG AGGCGATCCT CGGGGTGTGT GACAACCTCG GCATCCGCGA GGTCGAGGTG
ATGACCAGCG AGGACGCCGA CGTCGAGGCC TACACCCACA ACACGAGCGT CAACTGGGAA
CGCGTCGAGC TGCCCGAACC GGTCATCGAG ATCCGCGACG CCCTCCAGGA CGTCATCCAC
GACCGGATGA CGCAGTTGAA GGAACTCGGG GTGACGTCCT CGACCCAGGC CGACGTCTCC
GAGCGGGAGA TCCGGAAGAT CCAGGCCAAG CTCCGGGAGT TGATGGACAA CGACCAATCG
GAGGGGTATC AGGGGATGAG CCTGCTCGCC GAGGTCCGGA AACTCCGGAC GGCCGTGACC
TACGCCGAAA CCCAGAGCGT CGAGAGCCTG CGCCGGTATC TCGAACGTCT CCGGGAGGCT
GCCCGGTCGT CGGGCGCTTC GAAGGCCGAT CAGCGCCTCA TCAGCGCGCC GAAAGTCCGG
GAGGCCCGCC GGAAGGCCGA GGACTTCGAG GACCTCCATC CGAAGTTCCG CCGGACGCGG
ATGCAGATCG CCGAGACGCT GGGCATCCAC GACGGCGAGC GCGTGATCGT CTTCACCGAG
TCCCGGGACA CCGCCGAGAC GCTGACGGAC TTCTTAGGCG AGCATTTCAG TGTCGAGAAG
TTCGTCGGCC AGAGTGACAC CGACGGCAGC GACGGCATGA CCCAGACCGA ACAGCAGGAG
ACCTTAGAAG CCTTCAGGGC CGGCGAATTC GAGGTCCTTG TCTCGACCAG CGTCGCTGAA
GAGGGCCTGG ACGTCCCGGA AGTCGATCTG GTTCTTTTCT ACGAACCCGT CCCGACAGCG
ATCCGGTCGA TCCAGCGCAA GGGCCGGACC GGCCGCCAGA CCGAGGGCGC GGTCGTGGTC
CTGATCGCCG AGGACACCCG CGACGAGGCC TACTTCTGGA AGGCCCGCCA GGACGAGAAG
CGCATGGAGG ACGAACTCCG GACGCTGAAG GACATGGCCG GCGACATCGA GAGCCACCTC
CGCGAACAGA TGGGGCTGGA GGGATACGGG GAGGCGTCCG CGGATTCGGA TGACACGGCC
GCCGGAAACG ACACGGCCGA CAGTGCCGGA GAGACGACTG ACGACCCGGC AGACGCCGAC
GATGATGACG AGCAAGCCGT CCAGGGAGCA GCCGATGACG CCGAGGACGA CGGCCAGACC
GGCCTGGACG CGTTCGCACC GGGAGACGAT GACGCCACCG AGTCACCCAC GGAGCAAACC
GACCCCGAGC CGGACGAGGA GGGGACGGTC GCGACGGCCG GCGGCGAGGA GGCAGTCGAG
GTCGTCATCG ACCAGCGCGA ACTCGACGCT TCGATCGGGC GTGATCTCTC GCGTCGCGAC
GGCTTCGAGA CCCGCCTGGA GACCCTGGAC GTGGGCGACT ACGTCCTCTC GGATCGCGTC
GTCGTCGAAC GCAAGACGAT TTCGGACTTC CTCGATACGC TGACCGGCGG CGATCGCTCG
ATGTTCGAGC AGGTCAAAGA CGACGCCCGC TATTACGACC GGCCGGTCGT GATTCTGGAG
GGTGACGGAC TCTACGAGGA GCGCAACGTC CATCCGAACG CGATTCGGGG CGCGTTGGCG
TCGCTCGCGG TCGACTTCGG CGCGAGCGTC CTCCGGACCG AAGACGAGGG CGAGACGGCC
GACCTCCTGG CGACCATCGC CACTCGCGAG CAGGAGACCG ACGACCGCGA AATCAGTGTT
CACGGCGAGA AGGGCTCGAA GACGCTGCCC GAACAGCAGG CGTACGTCGT CGCGTCGATC
GCCGACGTGG GGCCGGTCAT CGCGCGGACG CTGCTCGAAC ACTTCGGCAG TGTGCAAGCG
GTGATGACCG CAAACGAGGA CGACCTCCTG GACGTCGATG GCGTCGGCGA GGTAACTGCC
GAGCGAATTC GGGAAGTTGT CGGCAGCGAG TACGAGGGGT AG
|
|---|
| Protein sequence | MAATDASEES IDRPLLEPGV LENRGYQIQL ADAAAADHTL VCLPTGLGKT TVSLLVTAER
LHAVGGKSLL LAPTKPLVQQ HADFYREALT IDDEEIVVFT GEVRPDDRAA LWDDATVVIA
TPQVVENDLL GSRIDLSPVT HCTFDECHRA SGEYPYTYIA ERYHEDSDDP LVTGMSASPG
DDEEAILGVC DNLGIREVEV MTSEDADVEA YTHNTSVNWE RVELPEPVIE IRDALQDVIH
DRMTQLKELG VTSSTQADVS EREIRKIQAK LRELMDNDQS EGYQGMSLLA EVRKLRTAVT
YAETQSVESL RRYLERLREA ARSSGASKAD QRLISAPKVR EARRKAEDFE DLHPKFRRTR
MQIAETLGIH DGERVIVFTE SRDTAETLTD FLGEHFSVEK FVGQSDTDGS DGMTQTEQQE
TLEAFRAGEF EVLVSTSVAE EGLDVPEVDL VLFYEPVPTA IRSIQRKGRT GRQTEGAVVV
LIAEDTRDEA YFWKARQDEK RMEDELRTLK DMAGDIESHL REQMGLEGYG EASADSDDTA
AGNDTADSAG ETTDDPADAD DDDEQAVQGA ADDAEDDGQT GLDAFAPGDD DATESPTEQT
DPEPDEEGTV ATAGGEEAVE VVIDQRELDA SIGRDLSRRD GFETRLETLD VGDYVLSDRV
VVERKTISDF LDTLTGGDRS MFEQVKDDAR YYDRPVVILE GDGLYEERNV HPNAIRGALA
SLAVDFGASV LRTEDEGETA DLLATIATRE QETDDREISV HGEKGSKTLP EQQAYVVASI
ADVGPVIART LLEHFGSVQA VMTANEDDLL DVDGVGEVTA ERIREVVGSE YEG
|
|---|
| |