| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_1270 |
|---|
| Symbol | |
|---|
| ID | 8383545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 1241412 |
|---|
| End bp | 1243091 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644972329 |
|---|
| Product | thermosome |
|---|
| Protein accession | YP_003130179 |
|---|
| Protein GI | 257052346 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02339] thermosome, various subunits, archaeal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAACC AGCCCCTCAT CGTACTTTCC GAGGACAGCC AGCGAACCTC TGGGAAGGAC
GCCCAATCGA TGAACATCAC CGCCGGGACC GCCGTCGCCG AGGCCGTTCG GACGACGCTC
GGCCCGAAGG GGATGGACAA GATGCTCGTC GACTCGACGG GCAACGTCGT CGTCACGAAC
GACGGCGTCA CCATCCTTGA CGAGATGGAT ATCGAGCACC CCGCGGCGAA CATGATCGTC
GAGGTCGCCG AGACCCAGGA GGACGAGGTC GGCGACGGCA CGACCACGGC CGTCATCATC
GCCGGTGAAC TCCTGAGCAA GGCCGAGGAC CTCCTCGAAC AGGACATCCA CGCCACGATC
CTCGCACAGG GGTATCGCCA GGCGGCCGAG CAGGCGAAAC AGATTCTCGA GGAGAACGCC
ATCGAGGTCA CTCCCGAGGA CGACGAGATC CTCGAACAGA TCGCGGCGAC CGCGATGACC
GGCAAGGGTG CGGAGAGCTC CAAGGAAACG CTCGCCGAAC TGGTCGTCAA CGCCGTCCAG
TCCGTCGCCA ACGGTGAGGA CATCGACACG GACAACGTCA AAGTCGAGAC CGTCGTCGGC
GGGTCGACCG ACGAGTCCGA ACTCGTCGAA GGCGTCATCA TCGACAAGGA GCGCGTCCAC
GACAACATGC CCTACGCCGT CGAGGACGCC AACGTTGCGC TGCTGGACAC GGCGATCGAG
GTCCAGGAGA CCGAGATCGA CGCCGAGGTC AACGTCTCGG ACCCGGACAA GCTCCAGGAG
TTCCTCGATC AGGAAGAGGC CCAGCTCCAG GAGATGGTCG ATCAACTCGC CGACGTCGGT
GCCGACGCCG TCTTCTGCCA GAAGGGCATC GACGACATGG CCCAGCACTA CCTCGCCCAG
GAGGGCATCC TCGCGGTCCG TCGCGCCAAG AAGTCCGACA TCAAGGCGCT CTCGCGTGCC
ACGGGCGCAC GCGCCGTCTC GAACATCGAC GATATCACCG AGGACGATCT CGGCTTCGCC
GGCAGCGTCG CCCAGAAGGG TGTCGCCGGC GACGAGCGCG TCTTCGTCGA GGACGTCGAG
GACGCCAAGG CCGTCACGCT CATCCTGCGC GGCGGCACCG AGCACGTCGT CGACGAGGTC
GAACGCGCCA TCGAGGACTC GCTGGGCGTC GTTCGCGTCA CGCTCGAGGA CGGCAAGGTC
CTGCCCGGCG GCGGGGCTCC CGAAGCCGAA CTCGCGCTTG GACTGCGTGA CCACGCCGAC
TCCGTCGGTG GCCGCGAGCA GCTCGCCGTC GAGGCCTTTG CGGACGCCAT CGACGTCGTC
CCGCGCACCC TCGCCGAGAA CGCGGGTCAC GACCCGATCG ACTCCCTCGT GGACCTCCGC
AGTCAGCACG ACGCCGGCGA CATCGGCGTC GGCCTGGACG CCTACTCCGG CGACATCGTC
GACATGAGCG AGGACGGCGT CTACGAGCCG CTGCGCGTCA AGACCCAGGC TGTCGAGAGT
GCGACGGAGG CCGCCGTGAT GATCCTCCGG ATCGACGACG TGATCGCCGC CGGCGACCTC
AAGGGCGGCG GCAGCGACGA CGGCGACGAC GGCGGCCCGC CCGCTGGCGG CCCCGGCGGC
GGTATGGGCG GCGGCATGGG CGGCATGGGC GGTATGGGTG GCATGGGCGG CGCGATGTAA
|
|---|
| Protein sequence | MGNQPLIVLS EDSQRTSGKD AQSMNITAGT AVAEAVRTTL GPKGMDKMLV DSTGNVVVTN
DGVTILDEMD IEHPAANMIV EVAETQEDEV GDGTTTAVII AGELLSKAED LLEQDIHATI
LAQGYRQAAE QAKQILEENA IEVTPEDDEI LEQIAATAMT GKGAESSKET LAELVVNAVQ
SVANGEDIDT DNVKVETVVG GSTDESELVE GVIIDKERVH DNMPYAVEDA NVALLDTAIE
VQETEIDAEV NVSDPDKLQE FLDQEEAQLQ EMVDQLADVG ADAVFCQKGI DDMAQHYLAQ
EGILAVRRAK KSDIKALSRA TGARAVSNID DITEDDLGFA GSVAQKGVAG DERVFVEDVE
DAKAVTLILR GGTEHVVDEV ERAIEDSLGV VRVTLEDGKV LPGGGAPEAE LALGLRDHAD
SVGGREQLAV EAFADAIDVV PRTLAENAGH DPIDSLVDLR SQHDAGDIGV GLDAYSGDIV
DMSEDGVYEP LRVKTQAVES ATEAAVMILR IDDVIAAGDL KGGGSDDGDD GGPPAGGPGG
GMGGGMGGMG GMGGMGGAM
|
|---|
| |