| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_1033 |
|---|
| Symbol | |
|---|
| ID | 8383306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | + |
|---|
| Start bp | 1000480 |
|---|
| End bp | 1002702 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644972097 |
|---|
| Product | Sec-independent periplasmic protein translocase |
|---|
| Protein accession | YP_003129949 |
|---|
| Protein GI | 257052116 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC
[TIGR01912] Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00293211 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAT TGATAACGGC GAGTTCGTTA CTCCTCCGAA CGAAGATGTC CGGAGCGCTC
GACGACGGCA CACGTCGCAC ACTCGCGAGT GGTCGAGAGA CGCTGGGAGC GATGCTTCGG
TCTGCACAGC AGGATCTCCA GAAGGTGTTT ATCGCGTTCG TTCTCGGCCT CGTGGGGACG
ATCTGGATAC TGCAGTCGTT CGTCTGGGAT CGGCTCAAGA CCGATATGTT TGCGGGCATG
AGCGAAGAGG TTCGGGAGGG AACCAACGTC GTTACCGTCT CGCCGTTCGA CGTCATTCTC
TTGCAGGTGA AGATCGGACT TATCGTCGGT GCGATCCTAT CGGTCCCGCT GTTTCTGTAT
TTCTCGCGTG ACGCACTCAG ACGACGCAAC TGGTTGCCAC AGGCTCCGAT CGCCCGCTGG
AAGATGGTGT TTTTGGTCGT CGCTATGCTC GCGCTGTTCG TCGGCGGCAT CGCCTACGCC
TATTCCGTCT TCTTCCCGAT CATGTTCCGC TTCCTGGCGT CAAACGCGAT CAACGCCGGG
TTCGTCCCGA CGTATCACAT CGTCAAGTGG GTCGAGTTCA TCCTGTTGCT CTCGCTGTCG
TTCGGGATCG CATCCCAGTT GCCGCTCGTC ATGAGTACGC TCGCGTACGC CGACATCGTG
CCATACGAGA CGTTCCGTGA CAAATGGAAG CACGCCATCT TCGGCCTGTA TGCGGGGGGT
GCGGTGTTCA CCCCGCCGGA CCCGATCACG CAGCTGATGT GGGCGACGCC GCTTGTCGGC
CTCTACGCCG TCAGTCTACA GATTACGAAA CTCGTCGTCG GTGCAAAGCG TTCACGCGGG
CAAGTCGACG TGAGTGAAAC GCTCCGTGCA CGGTGGAACG TCCTCGCCGG GACAGCGATC
ACAGCTTTCG CCGTCGTCTA CGGCTTCTTC AGTGCCGGCG GCGTGGGAGC GATCAACGAG
GGACTCTCGA TGGCTCCCGG CGATCTTGGA CCAGTACCGA CCATCGGGGC GGCCCTGGGG
CTACCCGAGT CCCAGGCGGC AGCACTGGTT GCCGGTGTCG TCGCCGTGAT GGCAGTCGCT
ATCGTCGGGT TTCGCTTGGT CGCCAGTCAG GTACAACAGG AAGCAGGTCT GGCGATGGCG
ACGATGGGCG ATCCGTCCGC GATCGACATC GGGAACCTCG ATAAGGCCGG TATCGAAGCC
GCACCGCCGG AGGCGTTCGA AGCACTCGAA GAACACGAAG CGATGGCCCA CGTCAACGAG
GCGATCGGGA ACGGGAACAC GGACAAAGCG GAACTCATCC TCGACCGGTA CGACGAGGCG
AACGAGCGGG CTCAAAACCG ACAAGACGCG ACAGCCGAGG GGGGCGAAGA AGGCGATTCG
GGCGTCGTCT CGGAGACGGC GACCGGTGTC GTCGACGCCT TCACCGAGGA GGAAACGACC
GAAGACGACA TCGGCGGCTA CATGTATGAC CTGCGGTTCA TCCTCGAATC GCTCACGTCG
AAGGCGTTCA GACTCGTCGC GGTCTTCATG GCCGTGCTCG CGGGATCGTT CATGTACCTC
TACTCGGGCG GGATCGGTGA CATCCGACGC GACTTCCTGC GCCGACTGCC GGCTGACAAG
ATCGATCAGG GGGATATCGC CGTCCTCCAC CCCGTCGAGC ATCTCGTGTT CGAGATCAAG
GTGAGCGCGT TGCTCGCCGT CGTCGCCGTG CTTCCGCTGG TGCTGTATTA CGTCTGGCCG
GCCCTGAAAG AGCGCGGGTG GGCCGCCGGT GACCGACGGA CGTTGCTCGT CTGGGGCGGA
TCGCTCGTGG TCGGCATCAG CGTGGGGAGT TACATCGGAT ACAGCTTCGT CGCGCCAGCC
GTCATGTCGT GGCTGGCTTC GGACGCGATC AACGCCCACA TGGTCGTCCG GTATCGGGTC
AATACCTTCG GGTGGCTGCT GGTGTTCACC ACTGTCGGGA TCGGCCTGCT CGCCGAAATC
CCCATCACAA TGCTGTTGTT CTACCGTGGT GGCCTCGTCT CCTACGAGCG CATGCGCTCC
GGGTGGCGCG TGGTCGTGTT GGCGTTTTTC GCCCTGGCAG CAGTCGTGAC GCCCGGCGGG
ATGTTCTCGC TTTTGATGGT CGCCATTCCG GCCGCACTGG CGTACCTCCT TGGCCTTGGC
ATCCTCTGGC TGTATACGCT CGGCGGCAGA CGGAAGGGGC CGCTGACGCC GGCGACGACC
TAG
|
|---|
| Protein sequence | MNKLITASSL LLRTKMSGAL DDGTRRTLAS GRETLGAMLR SAQQDLQKVF IAFVLGLVGT
IWILQSFVWD RLKTDMFAGM SEEVREGTNV VTVSPFDVIL LQVKIGLIVG AILSVPLFLY
FSRDALRRRN WLPQAPIARW KMVFLVVAML ALFVGGIAYA YSVFFPIMFR FLASNAINAG
FVPTYHIVKW VEFILLLSLS FGIASQLPLV MSTLAYADIV PYETFRDKWK HAIFGLYAGG
AVFTPPDPIT QLMWATPLVG LYAVSLQITK LVVGAKRSRG QVDVSETLRA RWNVLAGTAI
TAFAVVYGFF SAGGVGAINE GLSMAPGDLG PVPTIGAALG LPESQAAALV AGVVAVMAVA
IVGFRLVASQ VQQEAGLAMA TMGDPSAIDI GNLDKAGIEA APPEAFEALE EHEAMAHVNE
AIGNGNTDKA ELILDRYDEA NERAQNRQDA TAEGGEEGDS GVVSETATGV VDAFTEEETT
EDDIGGYMYD LRFILESLTS KAFRLVAVFM AVLAGSFMYL YSGGIGDIRR DFLRRLPADK
IDQGDIAVLH PVEHLVFEIK VSALLAVVAV LPLVLYYVWP ALKERGWAAG DRRTLLVWGG
SLVVGISVGS YIGYSFVAPA VMSWLASDAI NAHMVVRYRV NTFGWLLVFT TVGIGLLAEI
PITMLLFYRG GLVSYERMRS GWRVVVLAFF ALAAVVTPGG MFSLLMVAIP AALAYLLGLG
ILWLYTLGGR RKGPLTPATT
|
|---|
| |