Gene Htur_5215 details

Gene Information

• Locus tag: Htur_5215
• ID: 8745763
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haloterrigena turkmenica DSM 5511
• Kingdom: Archaea
• Replicon accession: NC_013747
• Strand: +
• Start bp: 108877
• End bp: 110910
• Gene Length: 2034 bp
• Protein Length: 677 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 646515572
• Product: putative PAS/PAC sensor protein
• Protein accession: YP_003406519
• Protein GI: 284176242
• COG category: [R] General function prediction only
• COG ID: [COG3413] Predicted DNA binding protein
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCACCGA CGACTCACGA GGACGATCTC GAGGCCGTCT CCGACGGGAG AGACGAGTCG 
AGGGCGAAAG ACGAGTCCGA CGCGGAGCCG TCGGTTCCCG TCGGGATCGT CCTCGAACTC 
GAGTCTCCCG AACGGGTACG GACTGCCCTG GAGCGACTGT CCGGAGCGTG GCTGGACGCG 
CCGACGGTCG TCGCTCCGCC GACCGGCAGT GAAGCGCTCG CGGCGGCGGC GCTGCGGGGC 
GACGCCGACG AGTACGCGCC CCTCGACGGC GACGGGGATC CGGTCGAGCG AATCCTCGAC 
GCGATTCGAC CGCCTCGCGG GACGGCCGAC GAGGCAGCCA GCGCCCACGA GAGCGACGGC 
GAACCGACGG CGGCGAACGG TGCAGGCCCG GCAGTGGGCG CCTCCACAGC CCCGGTCGAG 
AGACAGCCGT CGACGGAATC GACCGGCGAG TACCACCGCA TCCTCGCGAA CGAGTTACCC 
GACGAGGCCT TCGTCATCGC CGCCGACGGC ACCTACCTCG AGGCGAAGGT CCGGCCCGAC 
GCCGCCGATC TCTACACGAC GACGGCCGAC GAACTGCCCG GGAAGACACT CATGGAGGTG 
TTTCCCGACG ACGACGCCGA GGAGTTACAG GCGTGTATCG ATCGAACGCT CCGGACCGGC 
GATATACAGT CGATCGAATA TGCGGCGAAG ACGACCGACG GCCGCCGACG GTACGAGGGG 
CGGGTCGTCC CGATCGACGA ACCGATCGAC GGCCGGAAGG CCGTCGTCTG GCTCGCCAGA 
GACATTACTG AGCGGATCCA GCGAGAGCGG GAACTGCGAT CGCGACGGGA CGAACTCGAG 
ACGCTCAACA GGATCAGCGC GGTCGTCGGA CGGGTGATCG ATACGCTGGT CGAGGCCCCC 
TCCCGGGAGG CCATCGAACG GGAGGTCTGC GACCAGCTCG TCGAGTCGGA ACTGTACTGC 
GGGGCCTGGA TCACCGAGCG AACGGGCGAG GGAACCCTCG CCTTCCGAAC CGGCGCCGGC 
GACGTAGACG CGCACCTCGA CTGCGCGAAC GAACTCGAGG AGGGCCACGA GTGTCTGGTC 
CAGCAGGCCG TCGAGACCGG CGAGATCCAA ACGGAGACGA AGATTCCGAC GAGCGATTCG 
ATACCCGAAC CGCTTCGGGC GGCCGCCCGG GCGGACGGCG TCCGATCCGC GATCGCCGCT 
CCGATCAGTC ACAACGACTC GGTCTACGGC GTGCTGACGG TCCTCGCGGG CCGCGAAGAC 
GCCTTCGGAG AGAGCGAGCG ATCCGGATTC GGCCTGCTCG GCGAGACGAT CGGCTTTACG 
ATCATGGCCG TCAAGAACCG CCAGCTGCTG TTTTCCGACA CGGTCGTCGA ACTCGAGTTC 
CGGATCGACG GCGGCGATAC CTTCTCGTTC GACCTCTCCG AGCGGTACGA CTGTACCGTC 
TCGCTCGAGT GGGCCGGGAC GACGACGGAC GGCCGTACCG TCCAGTACGT CACGATCGAC 
GGCCTCGACG GCGAGACCGT CCTCGAGGAG GCCGACGCCC ACCCGTCGAT CGAGAACTGT 
CGGCTCATTC ACGACGGCTG CGAGAGCTGC ACGGTCGAGA TGCGCCTCGC GAAGTCGGGG 
GTCCGGACGC TCGCGAACCA CGGCGCGACG TTCCGCGAGG TCACCGTCGA CGACGGCGTG 
GGAACCTGTC TGATCGAGGT CTCCCAGGAC GCGAACGTCC GCGAGATCGC GAAGGCGTTG 
ACCGTGATCT ACGAGAACAC CGAACTCGTC GCGCGCCGCG AGATCGACCG TCCGGTTCGA 
ACCGCCGCCC AGCGGCGGGA TCGCGTCTTC GATCAACTGA CCGATCGACA GCTGACGACG 
CTGCGACTCG CCTACTACAG CGGCTTCTTC GAGTGGCCCC GCGAGAGCAC CGGCGAAGAG 
ATCGCCGAGG CGATGGACGT CTCGCCGCCG ACGATGCACC AGCACCTCCG GAAAGGGATG 
AAGGCGGTCC TCGAGGAGTT CTTCGAAGCC GGCGGCGGCC CGGAGCTGAA CTGA 

 

Protein sequence

MPPTTHEDDL EAVSDGRDES RAKDESDAEP SVPVGIVLEL ESPERVRTAL ERLSGAWLDA 
PTVVAPPTGS EALAAAALRG DADEYAPLDG DGDPVERILD AIRPPRGTAD EAASAHESDG 
EPTAANGAGP AVGASTAPVE RQPSTESTGE YHRILANELP DEAFVIAADG TYLEAKVRPD 
AADLYTTTAD ELPGKTLMEV FPDDDAEELQ ACIDRTLRTG DIQSIEYAAK TTDGRRRYEG 
RVVPIDEPID GRKAVVWLAR DITERIQRER ELRSRRDELE TLNRISAVVG RVIDTLVEAP 
SREAIEREVC DQLVESELYC GAWITERTGE GTLAFRTGAG DVDAHLDCAN ELEEGHECLV 
QQAVETGEIQ TETKIPTSDS IPEPLRAAAR ADGVRSAIAA PISHNDSVYG VLTVLAGRED 
AFGESERSGF GLLGETIGFT IMAVKNRQLL FSDTVVELEF RIDGGDTFSF DLSERYDCTV 
SLEWAGTTTD GRTVQYVTID GLDGETVLEE ADAHPSIENC RLIHDGCESC TVEMRLAKSG 
VRTLANHGAT FREVTVDDGV GTCLIEVSQD ANVREIAKAL TVIYENTELV ARREIDRPVR 
TAAQRRDRVF DQLTDRQLTT LRLAYYSGFF EWPRESTGEE IAEAMDVSPP TMHQHLRKGM 
KAVLEEFFEA GGGPELN