| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Htur_4272 |
|---|
| Symbol | |
|---|
| ID | 8744900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haloterrigena turkmenica DSM 5511 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013744 |
|---|
| Strand | - |
|---|
| Start bp | 537327 |
|---|
| End bp | 540086 |
|---|
| Gene Length | 2760 bp |
|---|
| Protein Length | 919 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 646514817 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003405764 |
|---|
| Protein GI | 284167486 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3413] Predicted DNA binding protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.312579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCTC GATCGCTGAC GGAGGCCCTT CGGGAGACGC TCGCGCTCTT CGACGAGGCC
GGGATCCCGC GGACGACGAC CGAACTGGCG GACGATCTCG AACTCGGTCG ACGGAGCACG
TACGAGCGAC TGGAGCGACT CGTCGAACGC GGCGAACTCG AGACCAAGCG CGTCGGGGCG
AGCGCCCGGG TGTGGTGGCG GCCCCCGTCG GCGAGAACCG ATCGACCGCT CGGTTCCGGA
GACTGGCCGG TCGAAGCCGA GTCCCTGCTC GCCGCCGCTC TCGACAGGAC CGACATCGGC
GTGTTCGTCC TCGACGAGTC GTTCAACGTC GCGTGGCTCA ACGAGACGGC CGAGCGATAC
TTCGATCTCG ACCGCGAGCG CGTCCTCGGG CGGAACAAAC GCCGACTCGT CGAGACCGAC
ATCGCGTCCG CGGTCGACGA CGCGACCGCG TTCGTCGACA CCGTTCTGGC GACCTACGAC
GACAACACGT ACGCCGAACG ATTCGAGTGT CGCGTGACGG CGGAGGAGGA GCGCGAACCG
CGCTGGCTCG AGCACCGCAG CGAGCCGATC GAGACCGGGG CGTACGCGGG CGGACGGATC
GAACTCTACC ACGACGTCAC CGATCGGAAG CAGCGCGCGT CGCGCGAACG GGAACTCGAA
CAGTACGAGC GGCTCGTCGA GACCGTCCCC GACGGCGTCT ACGCGGTCGA CGAGGACGCC
CGGTTCGTCG CGGTCAACGA CGGCTTCTGT GAACTGACGG GATACGACCG GGACGAACTC
CTCGGGGCGC ACGCGACGAC CGTCCACGAC GCCGAGATCA CGACGCGGGC CGAGTCGCTG
GCCGAGGAAA TCGCGACGGG CGAACGAGGT TCCGCGACCA TCGAGCTCGA TCTACAGACC
GACGGCGGAG CGACCGTTCC GTGTGAGAGC AGGCTGGCCC CGTTCCCGCT GGGCGAAACC
GACGGCCGCT GCGGCGTGGT TCGCGACGTC TCCGATCGCA TCGAACGGGA ACGGACGCTT
AGACGACGGA TCCGGCAACA GGAAGTCGTT GCGGACCTCG GTCAGCGGGC GCTCGAGAGC
CGGGACCTGG ACGAACTGCT GGCCGACGCG GCCGACCTGC TCACCACGAC GCTCGAGACG
GACTACTCCA AGGCGCTCGT TCTCGATCGG ACCGCCGACG AACTCCGGTT GCGACAGGGT
TCCGGCTGGG ATCCGAACGT CGTCGGAACG ACGACCGTCT CGGCCATCGA AGACGAGTCA
CAGGCCGCCT ATACGCTGGC GTCTGGGGAT CCGGTCCTGG TAGACGACCT CGACTCGGAG
TCGCGCTTCA GCGGGCCCGA CCTGTTGACC GACCACGACG TCACGAGCGG TATCAGCGTC
ATTATCGGTT CCAGTGAGGA TCCCTGGGGG GTCCTCGGAG TCCACGACAC CGATCACCGG
GCGTTCTCGG AACACGACGT CGCCTTCGTT CAGTCGGTCG CGAACGTACT CGCGACCGCC
ATCGACCGGA ACGATCGCGA GCGGGAACTG AAGCGCCAGC ACGAACAACT CGCCGCGCTC
GACTCCCTCA ACGGCGTCGT CCGCGACATC ATCGATGAGG CCATCGACCG GTCGACGCGC
GAGGAGATCG AGCGGAGCGT CTGCGAGCAC CTCGCCGCGA CGGACTCGTA TCTGTTCGCG
TGGATCGGCG ACGTCGACGC CGCCGATCAG ACGGTGAACG TTCGAACCGA GGCCGGCGGC
GTGGCGGAGT ACCTCGAGGG GATCGCCATC TCCGTCGATC CGGACGACGA GCGAAGCGGC
GGAGCGACGG GCAGGGCCGT TCGGAAACGC GAGATCCAGA CCACGCAGGA TATCCGTGAC
GACTCCAGAT ACGAACCCTG GCGGGGCCAC CTCGAGGAGT ACGAGATCCG GTCGTCGGCC
GCGATCCCGA TCGTCCACGA AGAGACCATC TACGGCGTGT TGAGCGTCTA CGCCGATCGG
CCGAACGCGT TCGATGGTCG AGAGCGCGCC GTGCTCGGCC AACTGGGGGA TGTGATCGGT
CACGCCATCG CTTCGACAGA GCGCAAGCGT GCCCTGATGA GCGACGACGT CGTCGAACTC
GACTTCCGAA TTAGAGATCT GTTGGACGAA CTCGACCTCG ACGTTCCGTC GGCCGGACGG
ATCACGCTCG ACCACACGGT CCCGATCGAG GACGACGAGT TCCTCGTTTA CGGGAGCGCG
ACTCCGGACG CGATCGACGG CCTGGAGGCG ATCGTCGAAA CGCTTCCCCA CTGGAAAGCC
GTCACGTATC GAGGCGGCGA CGCAGCGACG CGGTTCGAAC TCCGACTCTC CGAGCCGCCG
GTGCTGTCGA CGGTCGCTTC GCTCGGCGGG TCGGTCGAGA GCGCCGTCAT CGAAGGCGGC
GATTATCGCA TGACGATCCA CGTGGCGTCG GGTGCGAAAG TCCGACAGGT TGTCAACGTC
GTGCAGGACG CCTACCCCAC GGCGGAACTA CTGAAACACC GTCAGCTCGA ACGACGGCAG
GACACGACCG ACCGCGCTCG CCACGCGCTG ACGGCGGTCC TCACCGATCG CCAGCGATCG
GCCCTCGAGG CGGCATACCA CGCGGGCTAC TACGAGTGGC CGCGCGACGC GTCCGGCGAG
GAGGTCGCCG AATCGCTGGA AATCGCACCG CCGACGTTCA ATCAGCACCT TCGGAAGGCG
CAGCGAAAGG TGTTCGACTC GCTGTTGTCG AGGTCCGGAC AGAACCGATC GACGGAATAG
|
|---|
| Protein sequence | MTSRSLTEAL RETLALFDEA GIPRTTTELA DDLELGRRST YERLERLVER GELETKRVGA
SARVWWRPPS ARTDRPLGSG DWPVEAESLL AAALDRTDIG VFVLDESFNV AWLNETAERY
FDLDRERVLG RNKRRLVETD IASAVDDATA FVDTVLATYD DNTYAERFEC RVTAEEEREP
RWLEHRSEPI ETGAYAGGRI ELYHDVTDRK QRASRERELE QYERLVETVP DGVYAVDEDA
RFVAVNDGFC ELTGYDRDEL LGAHATTVHD AEITTRAESL AEEIATGERG SATIELDLQT
DGGATVPCES RLAPFPLGET DGRCGVVRDV SDRIERERTL RRRIRQQEVV ADLGQRALES
RDLDELLADA ADLLTTTLET DYSKALVLDR TADELRLRQG SGWDPNVVGT TTVSAIEDES
QAAYTLASGD PVLVDDLDSE SRFSGPDLLT DHDVTSGISV IIGSSEDPWG VLGVHDTDHR
AFSEHDVAFV QSVANVLATA IDRNDREREL KRQHEQLAAL DSLNGVVRDI IDEAIDRSTR
EEIERSVCEH LAATDSYLFA WIGDVDAADQ TVNVRTEAGG VAEYLEGIAI SVDPDDERSG
GATGRAVRKR EIQTTQDIRD DSRYEPWRGH LEEYEIRSSA AIPIVHEETI YGVLSVYADR
PNAFDGRERA VLGQLGDVIG HAIASTERKR ALMSDDVVEL DFRIRDLLDE LDLDVPSAGR
ITLDHTVPIE DDEFLVYGSA TPDAIDGLEA IVETLPHWKA VTYRGGDAAT RFELRLSEPP
VLSTVASLGG SVESAVIEGG DYRMTIHVAS GAKVRQVVNV VQDAYPTAEL LKHRQLERRQ
DTTDRARHAL TAVLTDRQRS ALEAAYHAGY YEWPRDASGE EVAESLEIAP PTFNQHLRKA
QRKVFDSLLS RSGQNRSTE
|
|---|
| |