| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_20850 |
|---|
| Symbol | |
|---|
| ID | 7313318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | - |
|---|
| Start bp | 2258392 |
|---|
| End bp | 2259258 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643612532 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_002509825 |
|---|
| Protein GI | 220932917 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAC TAAAAAATCT ATCACTTAAG AAGGTAGTAT TTTATCTGGT TTTGACTGTG
GTAATTTTCT ATCTGCTTTT CCCTTTTTAC TGGGCTGTTA ATACTTCTTT TAAGTCAGAA
GCCCAGTTGT CTATGACCCC GGCAACTTTT TTACCTGTTG ATCCTGAAAC AGGAGAGGTT
TCTTTTTATC TCCGTAATTA TGAAGCGGTC TTTGAGGATG ACCAGTTTAT GAGGGGACTT
TTAAATAGTA CCATTGTAGC CGGTTTTACA ACTTTACTTG CTTTACTTGT TGGTTCCTTT
GCGGCCTTTG CCCTGGGTAA ACTCAGGTTT AAGGGGAAAC GGCCTTCCCT TTATGTAATA
CTGGCCATGA CCATGTTTCC TCAGGTGACG GTACTTTCAG GGTTATATGC TGTTATCAAT
TACCTGAATC TTGATGCGAT TTTAAGTATG ATTTTAAGTT ACATGCTTTT TACCTTACCT
TTTACAACCT GGGTTATGAC TGCCTTTTTT AAGGATTTAC CTATTGAGAT TATGCAATCA
GCCCAGGTGG ATGGGGCTAC CCCCTTCCAG ACATTCAGGA TGATTCTCTT ACCACTTACA
GCTCCGGCAT TAGTTACTAC CGGGTTACTT TCTTTTATTG CAGCCTGGAA TGAATATCTT
TTTGCCCTGA CCTTTACTTC AATAGATGTT AAGGCCAGGA CAGTTCCGGT TGCTATTCAG
TATTTTGCTG GTAATTTTGC CCGTCAGGAA CCCTTCGGGG AGCGGATGGC AGCAGCAGTA
ATTGTAACTA TCCCTATTGT AATCCTGGTT TTAATCTTCC AGAGGAAGAT AGTCCAGGGT
TTAACTGCAG GAGCAGTCAA AGGTTAA
|
|---|
| Protein sequence | MTKLKNLSLK KVVFYLVLTV VIFYLLFPFY WAVNTSFKSE AQLSMTPATF LPVDPETGEV
SFYLRNYEAV FEDDQFMRGL LNSTIVAGFT TLLALLVGSF AAFALGKLRF KGKRPSLYVI
LAMTMFPQVT VLSGLYAVIN YLNLDAILSM ILSYMLFTLP FTTWVMTAFF KDLPIEIMQS
AQVDGATPFQ TFRMILLPLT APALVTTGLL SFIAAWNEYL FALTFTSIDV KARTVPVAIQ
YFAGNFARQE PFGERMAAAV IVTIPIVILV LIFQRKIVQG LTAGAVKG
|
|---|
| |