| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_01100 |
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| Symbol | |
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| ID | 7313237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | + |
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| Start bp | 127965 |
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| End bp | 131462 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643610532 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_002507866 |
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| Protein GI | 220930958 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000289877 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGAAAG GGGAGAGGCC CTTGTTTAAT GTAAATAGTT TTGACTCCAT GAAAATAAGT
GTTGCTTCAC CGGAGCAAAT TCGTGACTGG TCCCGCGGGG AAGTTAAAAA ACCAGAAACG
ATTAATTATA GAACGCTTAA ACCTGAAAAA GATGGTCTTT TTTGCGAGAA AATTTTTGGC
CCTACAAAAG ATTATGAATG TCATTGTGGA AAATATAAGC GGGTCAGGTA TAAGGGGGTT
GTCTGTGACC GCTGTGGTGT TGAAGTAACC CATTCTAAAG TGAGACGGGA AAGGATGGGG
CATATTGAGT TAGCAGCCCC CTGCACTCAC ATCTGGTTTT TTAAAGGGAT CCCCAGCAGG
CTAGGTCTTA TTCTGGATAT GTCTCCCCGG GCCCTTGAAA AAGTAATTTA TTTCGTATCA
TATATCGTTA TTGATGCAGG AGAGTCACCA CTGAGTGAAA AACAACTCCT TTCTGAAACA
GAATATAGAG AAGCCCGACA GAAATATGGA GATTCTTTTG AGGCCGGTAT GGGAGCTGAA
GCTGTTAAAG AGCTTTTGAA AAAAATTGAT GTCGGAGCAG AGGTTAAACG GCTCAAAAAA
GAAGTAAAAG AAGCAAGTGG TCAGAGAAGG AAAAGAGCTA TCAGGAGACT TGAGGTCCTT
GACGGCTTAA ATAAATCTGG AATTAAGCCA GAGTGGCTGG TTCTTGAAGT TATTCCTGTT
ATACCCCCAG ACCTACGACC AATGGTACAG CTTGACGGAG GCCGCTTTGC TACTTCTGAC
CTTAATGACC TTTACCGACG GGTAATAAAC AGAAATAACA GGCTTAAAAG GTTGCTTGAT
CTGGGAGCCC CAGAGATTAT AATCAGAAAT GAGAAACGAA TGCTCCAGGA AGCAGTGGAT
GCTTTAATAG ATAATGGTCG GCGTGGCCGC CCTGTTACCG GAGCCGGTAA TAGACCATTA
AAATCCCTCA GTGATATGTT AAAGGGTAAG CAGGGAAGGT TCAGGCAGAA TCTTCTCGGT
AAAAGGGTCG ACTATTCAGG TAGGTCAGTT ATTGTTGTTG GTCCAGAATT AAAAATGCAT
CAATGTGGAC TTCCCAAGAA AATGGCTCTT GAACTGTTTA AGCCTTTTGT AATGAAGGGG
TTAGTTGATA AAGGACTTGC TCATAATATT AAAAATGCCA AAAGGATGGT AGAAAGGGTA
GATGATGAAG TCTGGGGGGT ACTGGAAGAG GTAATTGAAG ATCATCCTGT TCTTTTAAAC
CGTGCTCCCA CCCTTCATAG ACTCGGAATT CAGGCCTTTG AACCTGTTCT GGTTGAAGGT
AAGGCCATTA AATTACATCC CCTGGTCTGT ACTGCTTATA ATGCTGACTT TGACGGGGAC
CAGATGGCAG TTCATGTACC ATTATCGGCA GAGGCCCAGA TAGAATCACG TGTTCTAATG
TTATCAACCA GCAATATTCT GGCACCTTCA GATGGAAGTC CGATCACAGT ACCTACCCAG
GATATGGTAA TTGGAATTTA CTATCTGACC ACCATAAAAG ATGGTGAAAA AGGTGAAGGC
AAATTATTTG CTTCCCCTGA AGAGGCCATT AAAGCCTATG ATACAGGAAA GGTTAGTCTG
CAGGCCAGAG TAAAAGTAAG ATTAGATGGA AAACTGGTAG AAACATCACC GGGGCGGGTA
ATATTTAATG AAGCCTTACC TGAAAAAATG GAATTTATTA ATTATCAGGT TGATAAAAGT
GAGCTGGGCG ATATTGTGGC TGATTTACAT GAGAAATTTG GAAATGATAT AACAGCCAGA
GCCCTGGATA AAATTAAAGA ACTGGGTTAT GATTTTGCGA CCCGGTCCGG TATTACTATT
GCTGTCAGTG ATGCTTCTAT ATCACCGGCC AAAGAGAAAA TTCTGAATGA GGCTGAAGAA
GAAGTTAGAA ATATAGAGCA GCATTATAGA AGAGGGGCTA TAACCGAGAA TGAAAGGTAC
CAGAAGGTTG TAGATATCTG GAACAAAGCT AAAGATGCTG TTACTGATGC TTTACTCGAT
CACCTGGGTG AAGACAACAA CATTTATATG ATGGCTATTT CCGGTGCCCG TGGTAATACT
TCTCAGATAT CACAGTTGGC CGGTATGCGT GGCCTTATGG CTGATCCTTC CGGTCGAATT
CTTGATATTC CAATCCGTTC CAGTTTCCGT GAAGGGTTAA ATGTTATGGA ATTTTTTATT
TCAACCCACG GAGCCAGGAA AGGTCTGGCT GATACAGCCA TCAGAACAGC AGACTCCGGA
TACTTGACAA GGCGTCTGGT TGACGTCTCC CAGGATGTAA TTATCAGAGA AGATGACTGT
GGTACTGAAA ATGGCATTTA TGTAGAAGCT ATCGGTGGTA AAGGTGATGA TGCCATTGAG
ACTCTTGCCG AAAGGTGTAT TGGGCGTCTG GCTGCAGAAG ATATAGTTGA TCCCTCTAAT
GATAAAGTAA TTGTCAAAAG GGATGAGTTG ATAACCAGAG ACAAAATGAA AGAAATAAAT
GCGGCCGGTA TCGAAAGGGT TAAAATCAGG TCTGTATTGA CCTGTGAAAC CAAACACGGT
GTTTGTCGTA AGTGTTATGG CCGGAATCTG GCTACCGGTA AACTTGTTGA TATTGGGGAA
GCAATCGGCA TTATTGCTGC CCAATCTATC GGAGAGCCAG GAACCCAGCT TACCATGAGG
ACCTTCCATA CCGGTGGTGT TGCCGGTGAT GATATCACCC AGGGTCTTCC CAGGGTTGAA
GAGTTATTTG AAGGAAGGAC CCCGAAAGGT CAGGCTATAA TAACTGAAAA GACCGGACGG
GTTAAAATAC TGGAAAAGAG AAACAGTAGA CGGATTGTTA TCGAAGATGA TGATGGTAAG
AAGAAAACTT ACCAGGTTCC ATATGGGTCC AAGGTTATTG TAAAGGATGG CCAGATGGTT
AAGGCCGGGG ATAAACTGAC TGAAGGTCCC CTTGATCCCA GTACTGTACT GAAAATCAAG
GGTGTTGATG AGGTTCAGGA TTATCTCCTA CAGGAAGTCC AGAAGGTATA CCGCTCCCAG
GGTGTTGAAA TTAATGATAA ACATATTGAA GTAATCATAA GGCAGATGAT GAGGAAAGTG
AGAATTATTG ACCCTGGTGA TACTGACTTC CTGCCAGGAA GCCTGGTAGA CCGGCTGGAA
TTTAATGAGA TTAACCATAA AATGGTTGAC GAAGGGAAAC AACCAGCCAC ATGTAAACCA
GAATTACTGG GTATTACCAA GGCATCCCTG GCTACTGACA GTTTCCTGTC TGCAGCTTCA
TTCCAGGAAA CTACCCGGGT TTTAACAGAA GCATCCTTGG AGGGTAAAGT TGATCCCCTC
CTGGGCCTTA AAGAGAATGT GATTATCGGT CAGTTAATTC CGGCCGGTAC AGGTATGAAG
TATTATCGTG ATATATCGAT GCTTGATGAT AATGGGCAAC CGATTCCGGG TAGTATTGAT
GAACTGGTTG AGGAATAA
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| Protein sequence | MKKGERPLFN VNSFDSMKIS VASPEQIRDW SRGEVKKPET INYRTLKPEK DGLFCEKIFG
PTKDYECHCG KYKRVRYKGV VCDRCGVEVT HSKVRRERMG HIELAAPCTH IWFFKGIPSR
LGLILDMSPR ALEKVIYFVS YIVIDAGESP LSEKQLLSET EYREARQKYG DSFEAGMGAE
AVKELLKKID VGAEVKRLKK EVKEASGQRR KRAIRRLEVL DGLNKSGIKP EWLVLEVIPV
IPPDLRPMVQ LDGGRFATSD LNDLYRRVIN RNNRLKRLLD LGAPEIIIRN EKRMLQEAVD
ALIDNGRRGR PVTGAGNRPL KSLSDMLKGK QGRFRQNLLG KRVDYSGRSV IVVGPELKMH
QCGLPKKMAL ELFKPFVMKG LVDKGLAHNI KNAKRMVERV DDEVWGVLEE VIEDHPVLLN
RAPTLHRLGI QAFEPVLVEG KAIKLHPLVC TAYNADFDGD QMAVHVPLSA EAQIESRVLM
LSTSNILAPS DGSPITVPTQ DMVIGIYYLT TIKDGEKGEG KLFASPEEAI KAYDTGKVSL
QARVKVRLDG KLVETSPGRV IFNEALPEKM EFINYQVDKS ELGDIVADLH EKFGNDITAR
ALDKIKELGY DFATRSGITI AVSDASISPA KEKILNEAEE EVRNIEQHYR RGAITENERY
QKVVDIWNKA KDAVTDALLD HLGEDNNIYM MAISGARGNT SQISQLAGMR GLMADPSGRI
LDIPIRSSFR EGLNVMEFFI STHGARKGLA DTAIRTADSG YLTRRLVDVS QDVIIREDDC
GTENGIYVEA IGGKGDDAIE TLAERCIGRL AAEDIVDPSN DKVIVKRDEL ITRDKMKEIN
AAGIERVKIR SVLTCETKHG VCRKCYGRNL ATGKLVDIGE AIGIIAAQSI GEPGTQLTMR
TFHTGGVAGD DITQGLPRVE ELFEGRTPKG QAIITEKTGR VKILEKRNSR RIVIEDDDGK
KKTYQVPYGS KVIVKDGQMV KAGDKLTEGP LDPSTVLKIK GVDEVQDYLL QEVQKVYRSQ
GVEINDKHIE VIIRQMMRKV RIIDPGDTDF LPGSLVDRLE FNEINHKMVD EGKQPATCKP
ELLGITKASL ATDSFLSAAS FQETTRVLTE ASLEGKVDPL LGLKENVIIG QLIPAGTGMK
YYRDISMLDD NGQPIPGSID ELVEE
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