| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3749 |
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| Symbol | |
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| ID | 8546142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 5153071 |
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| End bp | 5154861 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 646388419 |
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| Product | Sigma 54 interacting domain protein |
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| Protein accession | YP_003268142 |
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| Protein GI | 262196933 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.552068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.248061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCAC TACGCGTACA AATTCCAGGG CATAGCCCCA CAGTCTTCCA CCTCTACAAG
AAGATCACAT CGCTGGGCTC GGCGCCCGAG AACGACATCG TGCTGCCGGA TGCGCTGATC
CTCGACGCCT TCGCCCACAT CCTGTTCGAC GGCCAGACCT ACACCATCGC CACGCTGTCG
CGTCGCTCCG AGCTGGTGGT CAACGGCAAG AAGCGCAAGA AGCACAAGCT CAGCCACGAG
GACAAGCTGG TCATCGGCCC CATCGAGATG CGCTTCTCGC TGATCGACGC GCAGCCGCCG
ATCGAGGAGG AGGCGGCCGA GACCGTCGCC GACATCGACG CCTACCGCAA GCTCTACGAG
TTCTCGGCCC GGCTCATGGA GAAGCACGAT CTCGCCGAGC TGCTCGACAC CTTGATGGAC
ACGGTCATCG AGATCACCAA CGCCGACAAG GGCTTCCTGA TCCTCATGGA AGGCGAGCAG
ATGCAGGTCA AAGTGGCCCG CAATCTCAAG CGCGAGAACA TCGCCGACGC GGTCTCGCAG
CTCTCCGACT CCATCGTCGC CAAGGTGATC AAGACGCTCA AGGCGGTGAT TATTTCGGAC
GCCATGAACG ACGCCGAGTT CTCGGGCTCG AAGTCGATCA TGAAGCTCAA GCTCACCAGC
GTCATCTGCG TGCCCCTGCT CGACGGCGGC AAGCTCACCG GGCTCATCTA CGTCGGCAAC
GACTCGATCG TCGACCTCTT CCAGCCCGAC GCCATGCAGG CGCTCACCGT GTTCGCGGCC
CAGGCCTCGC TGATCATCGC CAACGCCCTG CTGCTCGACC ACCTACGGGT CGACAACCGC
CAGCTCAGCG AGCGCCTCGA GCAGATCCGC TTCGGCGAGA TCATCGGCAC CAGCGCGCCC
ATGCAGCAGG TCTTCAAGAA GGTCGAAAAA GTCGCCGGCA CCGACATCTC GGTGCTCATC
ACCGGCGAGA CCGGCACCGG CAAAGAGCTC ATCGCGCGCG AGATCCACGC CCGCTCGCCG
CGCGCCAAGG CGCCGTTCGT GACCATCAAC TGCGGCGCCA TCCCCGAGAA CCTGCTCGAG
TCCGAACTCT TCGGCCACGT CAAGGGCGCG TTCACGGGCG CGGTGGCGAG CAAGCAGGGC
AAATTCCAGG CCGCGCACGG CGGCACCCTG TTCCTCGACG AGATCGGCGA GATGCCGCTC
AACCTGCAGG TCAAGCTGCT GCGCGCCATC CAGGAGAAGA TCGTCATCCG CGTCGGCGAG
ACCCGGGCCG AGCCGGTCGA CATCCGCATC CTCACCGCCA CCAACCGCAA GCTCGAGGAC
GAGATCGAGT CGGGCACCTT CCGCGAGGAT CTCTACTACC GGCTCAACGT GGTCAATATC
CACCTGCCGC CGCTGCGCGC GCGCGAGGAG GACGTGGTCG TCATCGGCCG CTACCTGCTG
GGCCGCTACG CCCAGGACTA CGGGTCCAAG GTCAAGGGCT TCTCGCCCAA CGCCACGGTG
GCGCTGCGCA AGTATCACTG GCCCGGCAAC ATCCGCGAGA TGGAGAACCG CATCAAGAAG
GCCCTGGTGC TGGCCGAGAC CACGGTCATC GGCCCCGACG ACCTCGGCCT CTCGGCCGAC
GTGCTGCCGC GCATCCTCAC GCTCAGCGAG GCCAAAGACC GCTTTCAGCG CGACTACATC
AACGAGATCC TGGCGCTCAA CAGCGGCAAC CGCACCAAGA CCGCGCGCGA TCTCGGCGTC
GATCCGCGCA CCATCTTCCG CCACCTCGAG AAAGAGGCCT CGGATGCGTG A
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| Protein sequence | MPSLRVQIPG HSPTVFHLYK KITSLGSAPE NDIVLPDALI LDAFAHILFD GQTYTIATLS
RRSELVVNGK KRKKHKLSHE DKLVIGPIEM RFSLIDAQPP IEEEAAETVA DIDAYRKLYE
FSARLMEKHD LAELLDTLMD TVIEITNADK GFLILMEGEQ MQVKVARNLK RENIADAVSQ
LSDSIVAKVI KTLKAVIISD AMNDAEFSGS KSIMKLKLTS VICVPLLDGG KLTGLIYVGN
DSIVDLFQPD AMQALTVFAA QASLIIANAL LLDHLRVDNR QLSERLEQIR FGEIIGTSAP
MQQVFKKVEK VAGTDISVLI TGETGTGKEL IAREIHARSP RAKAPFVTIN CGAIPENLLE
SELFGHVKGA FTGAVASKQG KFQAAHGGTL FLDEIGEMPL NLQVKLLRAI QEKIVIRVGE
TRAEPVDIRI LTATNRKLED EIESGTFRED LYYRLNVVNI HLPPLRAREE DVVVIGRYLL
GRYAQDYGSK VKGFSPNATV ALRKYHWPGN IREMENRIKK ALVLAETTVI GPDDLGLSAD
VLPRILTLSE AKDRFQRDYI NEILALNSGN RTKTARDLGV DPRTIFRHLE KEASDA
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