Gene Hoch_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3000 
Symbol 
ID8545388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4154001 
End bp4155137 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content70% 
IMG OID646387672 
ProductNADH:flavin oxidoreductase/NADH oxidase 
Protein accessionYP_003267400 
Protein GI262196191 
COG category[C] Energy production and conversion 
COG ID[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0783017 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.378795 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGACA ACAACGCCAA TTCTTCCGTC GCCACCGACG TCCTGTTCCG GCCGTTCCGC 
ATCGGCTCGC TTGAGCTGCG CAACCGCATC GTCATGGCCC CGATGACCCG GGCCATGGCC
CCGAATGGCA TTCCCGGCCC GGCCAATGCC GCGTACTACC GCCGCCGTGC TGAGGGCGAG
GTCGGCTTGA TCCTGTCCGA GGGCACCGTG GTCGAGCGTC CGGCCTCGCG CAATATGCCC
GGCATTCCGC TGTTCTACGG CGAAGAAGCG CTCGCGGGCT GGCGCGGCGT CATCGACGAG
GTGCACGCAG CGGGCGGGCG TATGGGTCCG CAGCTCTGGC ACACGGGCTC GGTCCGGGCA
TCGAAGGAGT GGGAGCCGGA GGCGCCGGTC GAGAGTCCCT CCGGCCTGAT CGGTCCGGGC
AAGCAGCGCG GTAAGGCCAT GAGCGAAGCC GACATCGCCG ACACCATCGC CGCGTTTGGC
CGCGCCGCCG CCGACGCCAA GCGGCTGGGC TTCGACGTGG TCGAGCTGCA CGGCGCGCAC
GGCTATCTCA TCGACCAGTT CTTCTGGGCG CCCACCAACC TGCGCGACGA CGGCTTCGGC
GGCGCGACTC TGCCGGAGCG CGCGCGCTTC GCCGTCGAGC TCGTGCGCAG CGTTCGGGCC
GCGGTGGGCG AGGACGTGCC GGTGTTCTTG CGGGTCAGCC AGTGGAAGCA GCAGGATTAC
GAGGCCCGGC TGGCGACGAC GCCGGACGAG ATGGAGGCCT GGCTCGGTCC TCTGGCCGAG
GCTGGCGTCG ATGTCTTCCA CTGCTCGCAG CGCCGGTTCT GGGAGCCGGA GTTTCCCGAA
ATCGACGGCG AGGAGGGACT GAACTTCGCC GGCTGGGCCA AGAAGCTGAC CGGCAAGGCC
ACGGTCAGCG TGGGCTCGGT CGGGCTCACG GGCGACTTCC TGGCCGCGTT TGGCGGCGCG
TCGTCGTCGG TGACGCCCCT CGATCGTTTG GTGCGCCGCA TGGAGCGCGA CGAGTTCGAC
CTGATCGCGA TCGGCCGCGC CCTGCTGAGC GACGCGCGCT GGCCCGAGAA GGTCCGCCGC
GGCGCCGCGG TAGAGCTGAA GGGCTTCCAG GCCGGCGACC TCGCCGCTCT CGACTGA
 
Protein sequence
MQDNNANSSV ATDVLFRPFR IGSLELRNRI VMAPMTRAMA PNGIPGPANA AYYRRRAEGE 
VGLILSEGTV VERPASRNMP GIPLFYGEEA LAGWRGVIDE VHAAGGRMGP QLWHTGSVRA
SKEWEPEAPV ESPSGLIGPG KQRGKAMSEA DIADTIAAFG RAAADAKRLG FDVVELHGAH
GYLIDQFFWA PTNLRDDGFG GATLPERARF AVELVRSVRA AVGEDVPVFL RVSQWKQQDY
EARLATTPDE MEAWLGPLAE AGVDVFHCSQ RRFWEPEFPE IDGEEGLNFA GWAKKLTGKA
TVSVGSVGLT GDFLAAFGGA SSSVTPLDRL VRRMERDEFD LIAIGRALLS DARWPEKVRR
GAAVELKGFQ AGDLAALD