Gene Hoch_1979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_1979 
Symbol 
ID8544361 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp2732612 
End bp2734024 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content75% 
IMG OID646386683 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_003266418 
Protein GI262195209 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.411021 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0777218 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGCCGAT GTCTGCGGCG CTCCTCGGTG TTGTTGGTGG ACGCCGATCC GGACGTTCTC 
GAGCGGGTGC GGGATTTCGG ACGGCTGCGC CTGATCGACG TGCACTGCGC GACCACGCCC
GAGGAGGCCG AGGCCATGGC CGCCGGCTGG CCCCTCGACG GCGCGTTGCT CAGCGCCTCG
GCGGGTTCGC CCGAGCGTCT CCTCGAGCTG GCGCACGCGC TGCACCGCTC GCAGGATGGG
GCGCCGCTGC CCTTGGCCTT TGTCTTCGAG GGTGAGAGCG GCCCGCCGGG GGAGGCCGGG
AGCGAGAGCG AGGAGGCGAG CGAGCCGGCG AGCGCGCTCG CGTCCCCGGG TGACGCCCAC
TGGCCCCGCG CCGGTGTCGA CGCCCGCCGC GCGGCGATTC GCGCCGGCGC CTCGCTGCTG
CTGAGCAAGC CGCTGAGCAT GCGCGCCTTT GTCGCCGCCG TGCACGCGCT GGAGAGCCGC
GGGCAGCGGC GGCGTGCGCG CATTCTGCTG GCCAGCCACG ACCGCGCGTA CGCGGGCTCG
CTGGCCAGCG CGCTGGCCGT GCACGGCATC GAGGTGGCGA ACGCCACGCT GTCGCGCGCG
GGCGAGACCT GCGCGGCGCT GGCCGCCGAG CCGGTCGAGC TGCTGCTGCT CGATGGCGGC
GAGGTCGGCG GCGAGGCCGG CGGCGTGGGG CTCGACCTGT GCCGCATGCT GCGCGCCAGT
GAGGACTACA AGACGCTGCC GGTGATGTGT TTGCTCGGCG ACGCGGGCGA GGATACGCGC
GTGGCCTGCT TCGCGGCCGG CGCGGTGGCG TGCATGCCGC GCGCGGTGTC CGAGCGCGAG
CTGTTGGCGC GCATCTTCGG CGTGCTCGAG CGCGAGCGGC TGCTCGGCGA AGCCGCCGAG
CGCGACGCGC TCACCGGGCT GCTGCTGCGC CACGCGTTCA TCGAACAGCT CGACCTGCGG
CTGCGGGTGG CCCAGCGCGA CCACGTGCCG CTGGCCGTGG CCCTCATCGA CATCGACGCG
CTCAAGTCGA TCAACGAGGG CTTCGGACGC GCGGCCGTGG ACGGCGCGCT GCGCGTGTTC
GGCGAGGTCC TCGAGCGCCG CTACCGGGCC GGTGATCTGC GCGGCCGCTG GGGCGGCGAG
GAGTTCGCGC TGGCGCTCAC GCATGAGGAC GCCGGCAGCG CGGCCACGCA CGTCGAACGC
ATGCGCTCGG AGCTGGCCGC GCGCCCCTTC GCGGGCGAGG GCGGCAGCTT CCACCTGCGC
TTCAGCGCCG GGGTGGCCTC GTACCCGCGC GACGGCCTCA ACCTCGACGA TCTGCTGCGC
GTCGCCGACC GCCGGCTGCA CGCGGCCCAC GCGGCCGGCG GCGATCGCAT CGAGCCCGCG
GCGCGCGGCG CCGGGCTGTT CGAGGAGCCA TGA
 
Protein sequence
MRRCLRRSSV LLVDADPDVL ERVRDFGRLR LIDVHCATTP EEAEAMAAGW PLDGALLSAS 
AGSPERLLEL AHALHRSQDG APLPLAFVFE GESGPPGEAG SESEEASEPA SALASPGDAH
WPRAGVDARR AAIRAGASLL LSKPLSMRAF VAAVHALESR GQRRRARILL ASHDRAYAGS
LASALAVHGI EVANATLSRA GETCAALAAE PVELLLLDGG EVGGEAGGVG LDLCRMLRAS
EDYKTLPVMC LLGDAGEDTR VACFAAGAVA CMPRAVSERE LLARIFGVLE RERLLGEAAE
RDALTGLLLR HAFIEQLDLR LRVAQRDHVP LAVALIDIDA LKSINEGFGR AAVDGALRVF
GEVLERRYRA GDLRGRWGGE EFALALTHED AGSAATHVER MRSELAARPF AGEGGSFHLR
FSAGVASYPR DGLNLDDLLR VADRRLHAAH AAGGDRIEPA ARGAGLFEEP