| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1869 |
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| Symbol | |
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| ID | 8535027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | - |
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| Start bp | 2004478 |
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| End bp | 2005638 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 646384250 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_003263738 |
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| Protein GI | 261856455 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0680786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGCTG AGTTTGTGCA GTCAGGTTTT TCGCCGGATG ACACACGCTG GATGCGCGAA
GCCTTGGCCT TGGCCGAGCG TGGCCTGACG ACGACGCAGC CTAACCCAAG GGTGGGTTGC
GTTATCGTTA ACGCGGGAGA AGTCGTTGGT CGGGGGTTTC ATGCGCTCGC AGGTGGCCCC
CATGCCGAAG TGTTCGCCTT GCAAGAGGCG GGCGAGCGCG CCAAGGGGGC GACCGCCTAC
GTCACACTCG AACCCTGCGC GCATGTGGGA AGAACGCCCG CTTGCGCACC GCAATTGGCT
GACGCCGGGG TTCGCCGTGT GGTCACCGCC ATGACTGATC CCGATCCGCG CGTAGCGGGG
GAAGGGCATG CCATTCTGCG CACAGCGGGC GTGCAGGTTG AGTCTGGCTT GCTGGAAGCC
GAGGCGCGTT GGCTTAATCG CGGGTTTTTA TCCCGTATCG AGCGCGGGCG TCCTTGGGTC
ACGGTCAAGA TTGCCCAATC GCTTGATGGC CGCACGGCGC TTGCCAATGG CGAAAGCCGC
TGGATTACGG GTGAAGCGGC CCGGCACGAT GTGCAGTTTC TGCGTGCGCG CCACGCGGCA
GTTTTGACCG GCGTGGACAC TGTGCTAACC GATGATGCGC GTCTCAATGT GCGGTTATCG
CCCGAGGCGC TTGCGATTGA CGGCGCTGTG CGCCAACCGT TGCGGGTCGT GCTCGATAGC
GGCTTGCGCT TGCCACCGTT CGCACCAATA TTTGATGTGC AAGGCGAGGT GCGTATCTAC
ACACGTGATG TGGATGCGGG TATTCATCAT GATGGTTTGA CCGCGCGGGG CGTTCAATTG
GTCGCAGCGC CACAGGCTGA ATTTGGTCTG GATCTTGGGT TCATCCTGCG TGATCTGGCC
CTGCAGGGCA TCAGTGAGGT TCTGGTTGAA TCAGGGCCAA AACTGGCGGG TGCCTTTGTC
GATCAGGGTT GGGTGGATGA ATTGATCATC TATCAAGCGC CGGTGTTGTT GGGGCATAAA
GCCCAACCCT GCCTTGATTT GGCATCGCCA ATTCGGCTCG ATGACGCACC CCGCTGGCAG
ATTCGGGACA CCACGCCAGT GGGGCAGGAT ATTCGCATCA CGCTGGTGCC ACTCGTCGAT
TCATCCGGTG TTGCTGGATG A
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| Protein sequence | MSAEFVQSGF SPDDTRWMRE ALALAERGLT TTQPNPRVGC VIVNAGEVVG RGFHALAGGP
HAEVFALQEA GERAKGATAY VTLEPCAHVG RTPACAPQLA DAGVRRVVTA MTDPDPRVAG
EGHAILRTAG VQVESGLLEA EARWLNRGFL SRIERGRPWV TVKIAQSLDG RTALANGESR
WITGEAARHD VQFLRARHAA VLTGVDTVLT DDARLNVRLS PEALAIDGAV RQPLRVVLDS
GLRLPPFAPI FDVQGEVRIY TRDVDAGIHH DGLTARGVQL VAAPQAEFGL DLGFILRDLA
LQGISEVLVE SGPKLAGAFV DQGWVDELII YQAPVLLGHK AQPCLDLASP IRLDDAPRWQ
IRDTTPVGQD IRITLVPLVD SSGVAG
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