| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1843 |
|---|
| Symbol | |
|---|
| ID | 8535001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 1978022 |
|---|
| End bp | 1979185 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 646384224 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_003263712 |
|---|
| Protein GI | 261856429 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0110864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAT CCGCTCTCGA CCCCTTTCTG AAGCTGCTGG CTGAAAAGGA AGGCTCGGAC
TTGTATTTCA GTACCGGTGC GTTGCCTGCG GTCAAAATTC AGGGCGAATT GCGATTCATC
GGCAAGGAAC GGCTCAAGCC GGGCCAGGTC GAGGGTTATG CAAAATCCAT CCTCAGCCCC
GAACAAACTG ATGCGTTCTA TCGCGATCTG GAACTCAACC TGGCATTAAG CCGCCCGTCC
CTTGGCCGAT TCCGCGTCAA CATTTTCATG CAGCGAGGCG AATGGTCCAT GGTGATTCGC
TTTATCAAGA GCGAAATCCC GCGTATTGCC GACCTCAATC TCCCGCAAGT CATCGAAAAA
CTGGTTGAAG AACGCCGCGG ATTGATTTTG GTGGTGGGTG CCACCGGCTC AGGCAAATCA
ACCACGCTCG CCGCCATGAT TGATTACCGG GCAGAAGCGC GGCCCGGACA CATCCTGACC
ATTGAAGATC CGATGGAGTA CGCCTTTAGG CACAGAAACT CCGTTGTCAA CCAACGCGAA
GTCGGTGTCG ATACGCACAG CTACGCCGCC GCTCTGAAAG AAGCACTGCG CGAAGCGCCA
GACGTCATCA TGATCGGCGA GGTGCGTGAC AAGGCCACCA TGGAACATGC ACTGGCCTAC
GCCGATACCG GTCATTTATG CGTATCGACG CTTCATGCGA CCAATGCTCA TCAGGCACTG
GACCGAATCA TTCGATTCTT CCCTCCGGAA TCGAGAGATC AGTTATTGAT GGATCTCTCC
TTGAATCTGC GCGCAATCAT CTCCCAGCGC CTTGTCATCG GCAGCCAGGG GATGCGTGTG
CCGGCCGTTG AAATCATGGT CAATACACCG TTCATCGCCG ATCTGATTAA ACGAGGCGAG
ATTGACGAGA TGAAAGAAGC CATGGAGAAA AACGAACTGG AAGGCTCGCA AACTTTCGAC
ATGTCTCTGC ACGCGCTATG GAAGGCCGGC AACATCGAAC GCGAAGAAGC GTTAAAAGCA
GCAGACAGCC GAGCCAACCT GGAATGGCGG ATGAACTTTG GCGCGGGGAA AGATGAACTC
CGAGCCTCTG CCGCGCAGGC ATCCACAAAG AACACCATGA AATCCAGCGC CACGCATGAC
GGTGAGCTAC CTCCGCTGGA TTGA
|
|---|
| Protein sequence | MNESALDPFL KLLAEKEGSD LYFSTGALPA VKIQGELRFI GKERLKPGQV EGYAKSILSP
EQTDAFYRDL ELNLALSRPS LGRFRVNIFM QRGEWSMVIR FIKSEIPRIA DLNLPQVIEK
LVEERRGLIL VVGATGSGKS TTLAAMIDYR AEARPGHILT IEDPMEYAFR HRNSVVNQRE
VGVDTHSYAA ALKEALREAP DVIMIGEVRD KATMEHALAY ADTGHLCVST LHATNAHQAL
DRIIRFFPPE SRDQLLMDLS LNLRAIISQR LVIGSQGMRV PAVEIMVNTP FIADLIKRGE
IDEMKEAMEK NELEGSQTFD MSLHALWKAG NIEREEALKA ADSRANLEWR MNFGAGKDEL
RASAAQASTK NTMKSSATHD GELPPLD
|
|---|
| |