| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1643 |
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| Symbol | |
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| ID | 8534801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 1774266 |
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| End bp | 1775747 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646384028 |
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| Product | Type IV secretory pathway VirD2 pilin (relaxase)-like protein |
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| Protein accession | YP_003263516 |
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| Protein GI | 261856233 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAATC AGGATTCTTT GCGTAGTACG CAAACTTCAG GCGGAAACAC ATCATCAGAG
CGGGAAAGTC CACTCAAATG GTTTATGAAA GGCATCAAAG ACAAGGATTC GCTCCGGCTT
CAGCGCAAAC AGACGGCAAA GCTATTGCGG GCGGTGCAAA CCTTTGGTCG AAACAGCCGA
TTGGGCGGCG GATTCCAGCA AAAGACATTG AGTAAGGAGG GGCGAAATCA CTTTCAGCGG
GTGGCTATTC GCCTAACCTA CTCGCCCAAT CGTGCGCCTG GGCAATGGGC GGCGCATGGC
AAGTACATTT CCCGCGATTC CGCCATTGAG GTGGGCGGCG GTGCCTTTGG CATGAACGGG
GCTCTGGATG CCGTGAGCAC TTTGCGAGAT TGGCAAACAG CGGATGACCC ACGCATGTTC
AAAATGATTA TCTCGCCTGA ATTCGGGGAG AAAATGGATT TGAAGAAATA CACACGCGAT
GTCATGGCCA AAATGCAACA TGATTTAGGC TGTGAATTTG AATGGGTCGC GGTCGATCAT
TACAACACGG ATAATCCGCA TGTGCATGTG GCTATTCGGG GAATGGATAT GTCAGGCCAT
GAAATCAGTA TCCCGCGAGA ATACATTAAA TCTGGGTTAC GGGAATCATC ACAAGATATT
GCCACGCAGC ATATTGGCTA TCGACAAGAA GCCGATATTA TAAAATCACT AGATAGGCAA
ATTAATCAAA ATAGATTTAC GGGGCTTGAT CGAGAATTGA TTAAAAAAGC AACTGCATTA
TCTGCCGTGA AACATTGGTA TCACGAAGAG CCTAATTCAA TTAATTTCAA AAATACAAAA
ATCAAAGAAT CAGACCGGTT GCGCCTGATT AAGCGATTAA CCCATCTTGA GCACATGGGA
TTGGCAAAAA AACGAAGTGG TATGGAATGG GAAATACGGG GGGATTTTGA GCAGGCATTA
CGCGTGAGGC AAATGTCTGA AGACCGGCTT AAAACCAAAT TCCAGCATGG AAAAACGTTA
TCTGATCCAG AAATGCCCTT GGTTTATCTG GATAGCCGCG AGCCGTTGGA AAAGCGGTTG
TTCGGGCGTG TGGTGGGCGT TGGCGAGGAT GAAGCCAAGA TGAAGCCTTA TGCCTTGATC
GAGGCCGTGG ATGGCCGTGT TTATTACCTG AATACCAACC AGTATCAGAA GGTTGGGACC
ACCGTTCATG TGCAAAATCT GAAATCCGGT GTCGGGGTGT ATCAAGAAGG GGATGCCGAA
TCGTTTTTGC GCGATCCAAA ACGCCTCATG TCTGTATCAG CCACTTTGGC GCGCGGCAGC
TACGCCGTGG CGCCTACAGG TTTGAGTGGA TGGGTGGGCG AATGCCAAGC CAACCTTGCC
ACCACCCAAG CAGCCATGGT GCAACGAGGC GTGATGCGCA TAGAGAACGG GATGGCAGTT
TGGTTGGGCA ATCGTCAACG ACAACGGGGT TTTACACGAT GA
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| Protein sequence | MANQDSLRST QTSGGNTSSE RESPLKWFMK GIKDKDSLRL QRKQTAKLLR AVQTFGRNSR
LGGGFQQKTL SKEGRNHFQR VAIRLTYSPN RAPGQWAAHG KYISRDSAIE VGGGAFGMNG
ALDAVSTLRD WQTADDPRMF KMIISPEFGE KMDLKKYTRD VMAKMQHDLG CEFEWVAVDH
YNTDNPHVHV AIRGMDMSGH EISIPREYIK SGLRESSQDI ATQHIGYRQE ADIIKSLDRQ
INQNRFTGLD RELIKKATAL SAVKHWYHEE PNSINFKNTK IKESDRLRLI KRLTHLEHMG
LAKKRSGMEW EIRGDFEQAL RVRQMSEDRL KTKFQHGKTL SDPEMPLVYL DSREPLEKRL
FGRVVGVGED EAKMKPYALI EAVDGRVYYL NTNQYQKVGT TVHVQNLKSG VGVYQEGDAE
SFLRDPKRLM SVSATLARGS YAVAPTGLSG WVGECQANLA TTQAAMVQRG VMRIENGMAV
WLGNRQRQRG FTR
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