Gene Hneap_1486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_1486 
Symbol 
ID8534644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp1607943 
End bp1609169 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content52% 
IMG OID646383877 
Productpolysaccharide export protein 
Protein accessionYP_003263365 
Protein GI261856082 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.721781 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCTGGA CGAATCTATC CCTTTGTGAA AAAGATTTTA AAAATATGAT TTATAACAAA 
TTACATCGTA CTTTGCTTCT CTTGCTGCCC ATTGTTGCCT TGTCAGGCTG TGTAACGACA
CCGGGTTGGA TGATGCGTGA TGGGCCTTCC TCTAACGACA TCACTGACCT GGCAGTGAAG
CCTAATGCGC CCGTTTTATT GCTTCCTATT GATGCACAAA TTAATCAAAT GCTCGCAGTA
GCGCAGAAAC ACGACAATTT TGCCTTGGGC TTGTCTGCCG CGCCAAAACC CAATTATGTC
ATTGGGCCAG GTGATGAGCT GAATGTGAGT GTTTGGGAAG CGCCACCACC GGTGCTGTTT
ACTTCCGGCT TGGCGAGCGT GACCGGGGGC ATGGGGTCAA GCGCAGGCAA TGTTACGTTC
CCGGCTCAGC GCGTCAGTTC GGATGGGACC ATTTCGATTC CGTTCGCCGG TACGATAAAA
GTCGCCGGTC TTTCGCCACA ACAGGTCGCT GCGCGTATTC GTAAGGCCTT AAAAGGGCTG
GCAAATGATC CGCAAGTGCT TGTGCAGGTG CCTAGTAACG CGAGTGCCAT GGTGACTGTT
GTCGGCGATG TGCAGCAAAG TATTCGAATG CCACTCACTG CGGCGGGTTT GCGTTTGCTG
GATGCTTTGG CGGCGGCAGG GGGAACAAAA GATCCGGTCG ATAAAGAAAC GGTGCAGATT
ACGCGCGGTA AAGAGGTTTT ATCTGTGCCC TTGCGCAAGG TGATCGACAA CCCTACCCAG
AATGTGGCGT TGGCGCCCAA TGACGTGATA ACGGTTCTGA ACAAGCCGAT GAGCCTGACC
GTGCTGGGCG CGGTTGCTAA AAATGATGAA TTGAATTTTG AAGCGCAGGG CATCTCGTTG
GCTCAGGCAT TGGGCCGTGC GGGCGGGCTG CTGGATAACC GTGCCGATGC GCGCGCGGTG
TTCGTGTTTC GATTTGAGCA GCCTGGCGTG TTGGGCAAGC TCGCCAAAAG CGCTCCACAC
CTTCAAAATG GTGACGTACC GGTGGTATAT CAGCTTAACT TGATGAATCC AGCGGCTTTG
CTCATGGCGC AAAATTTCCC CATGAAAAAC AAAGATGTGC TGTATGTGGC CAATGCGCCA
GCGGCTGAGT TCCAGAAGTT TTTAACCATT ATTACCTCAT CGATATATTC AGTTGATCGA
GTGGTAAACA TTTCCGCCGG TAACTAA
 
Protein sequence
MAWTNLSLCE KDFKNMIYNK LHRTLLLLLP IVALSGCVTT PGWMMRDGPS SNDITDLAVK 
PNAPVLLLPI DAQINQMLAV AQKHDNFALG LSAAPKPNYV IGPGDELNVS VWEAPPPVLF
TSGLASVTGG MGSSAGNVTF PAQRVSSDGT ISIPFAGTIK VAGLSPQQVA ARIRKALKGL
ANDPQVLVQV PSNASAMVTV VGDVQQSIRM PLTAAGLRLL DALAAAGGTK DPVDKETVQI
TRGKEVLSVP LRKVIDNPTQ NVALAPNDVI TVLNKPMSLT VLGAVAKNDE LNFEAQGISL
AQALGRAGGL LDNRADARAV FVFRFEQPGV LGKLAKSAPH LQNGDVPVVY QLNLMNPAAL
LMAQNFPMKN KDVLYVANAP AAEFQKFLTI ITSSIYSVDR VVNISAGN