| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0676 |
|---|
| Symbol | |
|---|
| ID | 8533812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 736259 |
|---|
| End bp | 738376 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 646383063 |
|---|
| Product | LppC family lipoprotein |
|---|
| Protein accession | YP_003262574 |
|---|
| Protein GI | 261855291 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3107] Putative lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCCA CTATTAGAGA TTTGAGCGCC TTCCGCCGAC AAGTTGCGAG TTTTCGTCAC
ATAACGAAGG CGGGCTTCGC GTTCCTGCTC ATGCTCGGCC TGCTCTCAGG CTGTGCTCAG
AACCCCTATA ATTCCAACAC AAGTCAAGCA CCATCCGGCC CGCAGGCTGC GCTCAATCAG
GCACTTGCCA GCCAGGATCC AAAACAGATC GCCGCCGCCC AGATGAACTA CGCCGCCACG
CTCAAAGGCA CCACGCAGGC GGATATGCAG ATGCGCGCAC TGGAAACGGC CATAGACGCC
GAAGATTTTG CGCTGGCAAA CACCCTCTAC GCGCAGGCAC ACACGCAAGC ACTCTGGCCT
GCCGTATCCG CACGGCGCGC CCAACTGCTC ACCGGGTTCG AACAATGGCA GCAAGGCAGT
CTTTCCAATG CATATGATAC GGTCAACAAT CTGCCGATAC CGCTGACTCC GGATGAAGCG
AAACGTCGCC TGATCCTGCT GGCCGCCATT GATGAAGCCG AAAAACGGCC TATCGATGCA
GCCCGCCAAC GCTCGGCACT TAATGATCTG CTCACCGGTG CAGCAGCAGA TCAAAACCGA
GCAACGCTCT GGAACGATCT TTCCTCAGCC GACATCAATC AACTCTCGGA TGCAGCGAAA
CAGGCAACCA ATGCCCATTT TGCCGACTGG ATCGGCCTTG CCCTGGCGTA CCGGACACGC
CCCGGAGAGC TGAACACCTG GATCAATAAC CACCCGGATC ATCCAGCGGT CACCTCCGGA
TTCACTGCCC TGCTCCTCAG CCGATCGGAT ACTGCCACAA ATATTCCCCT ACCGACGGGC
CAAGGGCCGG TCATTGTATT GGTGCCGCTA TCCGGCGATT ACCAGCCTGT AGGCCAGGCC
ATCAGCGATG GCATCAATTT CGCCCATGAC CGGCTCGGAA TGGCCGGTGA TCGCAGCGTT
CAGATTCAGG ACAGCGGCAG CACACTGGCC TCTTTCACCC AGGCATTGAC GGCGGCGCTG
GCAACCAATC CTTCGGTGAT TATCGGGCCG CTGCTCAAGG AGCAGATTCC AGCGCTTGCC
AACCTGCCTG CCAATGCACC ACCCGTCATT GCCTTGAACA CACCCACCGA TGGCACCAGC
CTGCCTGCCG GTGTCGTAAG CTACTCGCTG TCGCCCGATG CCGATGCGCG TGCCGCTGCC
GATCAGATGA TTCGCGACCA GAAAATGACA GCGCTGGTCT ACTGCGCGGA CAACAGCCTC
GGTCACCGCA TCAGTGATGC CTTCACGCGT GAGTACACTC TGCTCGGCGG GCAGATTCTC
GACAACGCCT TCTTCGAACC GAGCGCCACC GATTTCTCGA GCCAGCTTCG CCGGCTACTG
GAAGTCACCT CTTCCAGAAA TGGCCCATTC CAGCCGAAGA TTAGACGAGA TGCGCAGGGG
ATTTTCCTTG GTGCCACCAG CCAGCAGATG CGGATGATCG TGCCGCAACT CGATTATTTC
GGCGCCGACC AGCTTCCTAG GTACAGCGTC GGCATGGTGT ACAACGGCAC GCCCAATCCG
CTCGCCAATC AGGACATGGA CGGCCTCGTT ATTCCGGTCG AACCGGTACT GCTCGCAGCC
AACGAGGGGC CAAACGGCAC CATGCGGCCT AATTACGAAC GCGCGAGCCT CTCACAACTC
CCGCGTCTAT TCGCTTTTGG CGCCGATGCC CTGATGATTG CCGCCAACTT GCAGCCCTTG
CTTGCGCATC AGGCCATCAA TGGGCTAACC GGTCAGTTGA GTCTCTCCCT GACAGGGGAA
ATTGAACGCA AACCGGCCTG GGGACAATTC CAACAAGGCC TGCTGCAACC GATGGACGGC
ACGGACAGTG GCTATATCCC AAGTACAGTC GTCGACTACA GCAGCAAGCA GGCAGAGGGC
AACCCGACGG TTGCTCTGCC GCCGGAAGAC AACATCACAC CCGACAGTGG TGACGGCACA
GCCACCCAAC CGGCGGGGTC GGAACCTACA GATTCGGGCA CTGCCAAGGC CGTGCCGACA
TTCACGGATG GCGGTGGCAT GGCGCCACCA CCGGCAAGCG TAGCGCCCAC AAATGATACT
GCCCCGATGG CTAATTAA
|
|---|
| Protein sequence | MPATIRDLSA FRRQVASFRH ITKAGFAFLL MLGLLSGCAQ NPYNSNTSQA PSGPQAALNQ
ALASQDPKQI AAAQMNYAAT LKGTTQADMQ MRALETAIDA EDFALANTLY AQAHTQALWP
AVSARRAQLL TGFEQWQQGS LSNAYDTVNN LPIPLTPDEA KRRLILLAAI DEAEKRPIDA
ARQRSALNDL LTGAAADQNR ATLWNDLSSA DINQLSDAAK QATNAHFADW IGLALAYRTR
PGELNTWINN HPDHPAVTSG FTALLLSRSD TATNIPLPTG QGPVIVLVPL SGDYQPVGQA
ISDGINFAHD RLGMAGDRSV QIQDSGSTLA SFTQALTAAL ATNPSVIIGP LLKEQIPALA
NLPANAPPVI ALNTPTDGTS LPAGVVSYSL SPDADARAAA DQMIRDQKMT ALVYCADNSL
GHRISDAFTR EYTLLGGQIL DNAFFEPSAT DFSSQLRRLL EVTSSRNGPF QPKIRRDAQG
IFLGATSQQM RMIVPQLDYF GADQLPRYSV GMVYNGTPNP LANQDMDGLV IPVEPVLLAA
NEGPNGTMRP NYERASLSQL PRLFAFGADA LMIAANLQPL LAHQAINGLT GQLSLSLTGE
IERKPAWGQF QQGLLQPMDG TDSGYIPSTV VDYSSKQAEG NPTVALPPED NITPDSGDGT
ATQPAGSEPT DSGTAKAVPT FTDGGGMAPP PASVAPTNDT APMAN
|
|---|
| |