| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0600 |
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| Symbol | |
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| ID | 8533735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 645268 |
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| End bp | 647349 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 646382988 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003262500 |
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| Protein GI | 261855217 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.223067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTGATG TGGCCAAACA GCGGGCTTTT GCCGTGCTTT ACCTTTCAAA TGAAATCAAT
GATGCAGTGA CACTGCGTAG TCAGCTTCGT AACCACGGTT TTGCGGCCAA TGTTTTACAC
GCAACATCCT TCGAAGAGGC GCTGACCCAG GCAGGCAAGA ATACATTGGA TGTCGTTTTG
GTCGATTTTG GAAGTCATTC CGGCAGCGTG CTCGATACCA TGCTGGAGGA TAACCATCGC
CCGGTTTTTG ATCGCCTGCC CAAACTGGTG ATCGCCGATG TGGACGACGA TGATCAGGTG
TTGCCGTTGT ATGAGTTGGG CGCCACGGCG GTTGTTACGC ACGAGTCGCG GCTGATTCCC
GTATTGGTTC GGGAGGTGGC TGCGTCCATG ACCGAGCAGG AAAGGACGCT TTTCCAGAAA
AAGCTGGCCA GCGCCGAAGG TCGTTGCCAA AAGCTGATTG ATGGCTCCGG TGAGGCCCTC
GCGTATATTC AGGATGGCCT GCACATTTAT GCCAATCATG CCTATCTGAG CTTGATGGGC
TTTAACGAAC TCGAAGAGTT GATTGACGAG CCATTGCTGG ATCGTGCCGT AGGCGATAGC
GCGGCACGGC TCAAATCGTT TCTCAAAGAA GACGAAGCCA GTGATGAGTT TGAATTGGAG
ACAGAGGGTG GGGACCGAAT CAAAGTCATC ATCTCTTCGT CGAAAGCAAC TTTCGATGGC
GAGGCCTGCC TGCAATTGTT TGTCGCCCCG AAGCAACAGA ATTCGGCCGA AATCGAGGAA
CAACTCGAAT TCCTGTCTCG ACGCGATTTG TTGACAGGTC TATACAACCG TAATTACTTC
TTCGATCAGT TGCATGAGCG GATTGATCTG ATCAAGCAGA GCGAAAATGA ACAGGGCGTG
TTGATGATGC TGGACATCAC CAACAGCGAA GCCCTGAAGA AAATGATTGG AACCACGGGA
GTGGATAGCC TCCTGACCGA GTACGGCAAG GAAGTGGAGG CGCTGGTCGG CGGCAAAGGA
TTGGTGGCGC GCCATGGGGC GTACTCATTC CTGGCTCTGT TGGGTAAAAC CGATTTGCCC
CATGCCGAGC AGGTCGTGAA CAGTCTGTTG GGCTATACCA AGGACTATAT TTTTACCCTG
GGAACGACAT CGGTCACCAT CAATATTTCC ATTGGCTACA CGTTGCTGGA CATCAATGCG
CCTGCAAATG TCATGGAATT GGTCGATCGT GCTGAACGGG CAACCAATAA GGCATCGGAG
CAGGGTGTCA ATCTGGCCGA GTTCTACAAG CCTGATCTCA AAACGGCCAG TGATGCAGAG
CAAGAGGAGA TATGGGCTCG TCGAATCAAG GATGCGCTCA AGGAAAACCG CTTCTTTTTG
GCGTTCCAGC CCATTGTCTC GTTACAGGGG CACCGCGATC TCAATCGGTT CGAGGTGTTC
CTGCGGATGA TCGATGAGCA GGGTAATCCA TTGAAACCTA TGGAATTTCT TGGCAAGGCA
GAACGCGGCG ATCTCATGCA GTCGATTGAC CGCTGGGTCA TTCTGAGTGC GATCAAGGAG
GTCCATGCCG GATTGAAACG CGCTGAGAAC ATCAAGCTTT ATCTGCGCAT CAGTGAGCAA
TCGCTTCGTG ATGAAGAATT TGCACAGTGG TTGATGAATC GACTCGCCAG TGTTCGTCTA
CCCGACCTGC TTCTGGTTAT CCAGGTTCGT GCCGATACGG CGGGGTATCT GCTCAAACAT
CTCGAGAACC TGCGCGATAC CATCGCCCCG CTGGGTTGCG GCTTGTTGAT CGACGGTTTT
GGGGAGGGTG CCGACTCCTA CCGCCTGCTC GACCACCTCA AAACCAAAGA GATCAAGATT
TCGCGTGCCC TGCTGGAAAA TTTCAGTCAG GAAGCGGCTC ACCAAACGGC GGTAACCAAA
TTGCTGAACG AAGCCAACGC ACGTGATGTT TCCGTGATCG TGCCCAATGT AGAAGACCCG
GCCACACTGC AGTTGCTCTG GCCGATGGGT GTCGATCTGG TGCAGGGTGA TTTTATTCAG
AGTCCACGCA AGGGGCTTGA ATTTGACTTT TCCCAGTTCT GA
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| Protein sequence | MRDVAKQRAF AVLYLSNEIN DAVTLRSQLR NHGFAANVLH ATSFEEALTQ AGKNTLDVVL
VDFGSHSGSV LDTMLEDNHR PVFDRLPKLV IADVDDDDQV LPLYELGATA VVTHESRLIP
VLVREVAASM TEQERTLFQK KLASAEGRCQ KLIDGSGEAL AYIQDGLHIY ANHAYLSLMG
FNELEELIDE PLLDRAVGDS AARLKSFLKE DEASDEFELE TEGGDRIKVI ISSSKATFDG
EACLQLFVAP KQQNSAEIEE QLEFLSRRDL LTGLYNRNYF FDQLHERIDL IKQSENEQGV
LMMLDITNSE ALKKMIGTTG VDSLLTEYGK EVEALVGGKG LVARHGAYSF LALLGKTDLP
HAEQVVNSLL GYTKDYIFTL GTTSVTINIS IGYTLLDINA PANVMELVDR AERATNKASE
QGVNLAEFYK PDLKTASDAE QEEIWARRIK DALKENRFFL AFQPIVSLQG HRDLNRFEVF
LRMIDEQGNP LKPMEFLGKA ERGDLMQSID RWVILSAIKE VHAGLKRAEN IKLYLRISEQ
SLRDEEFAQW LMNRLASVRL PDLLLVIQVR ADTAGYLLKH LENLRDTIAP LGCGLLIDGF
GEGADSYRLL DHLKTKEIKI SRALLENFSQ EAAHQTAVTK LLNEANARDV SVIVPNVEDP
ATLQLLWPMG VDLVQGDFIQ SPRKGLEFDF SQF
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