| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0401 |
|---|
| Symbol | |
|---|
| ID | 8533523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 416802 |
|---|
| End bp | 418271 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 646382780 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
|---|
| Protein accession | YP_003262305 |
|---|
| Protein GI | 261855022 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTGA TTCTTCCCCG TCGTCTTCGC TTTTTTCTGT TGGCAGCGTT TTTTCTCGGT
ATCGGGTCCG CGAACATTCA ATCGGCGACC GCAGCCGGGG CGGTTGGGAT GCCGCCGAGT
GTGCTCGAAA CGCTGAAAAA GCAGAAATTG AGCCTGGGTG ATCTGGGCAT CTGGGTTCAG
GCGGTCGATA GCAACAAACC CTTGCTCACG CACTTGCCGG ACGATCTGTT CAATCCCGCT
TCGGTGATGA AGCTGGTGAC TTCGGTGGTG GCGCTGGATG TGCTGGGCAC CAACTTTCAG
TGGACGACCC GGGTTTATGC CGATGCCTTG CCGGTCAACG GTGTGGTGCA CGGCAACCTG
TATATCAAGG GTGAGGGCGA CCCCTGGTTT CGTAGCGAAG ATCTCTGGGA TCTGGTTCGC
CAGTTGAGTG ATCTTGGAAT CCATGAAGTC ACGGGCAAGC TTGTGCTCGA CAATAGTTAC
TTCGATCCCG GTCCGGCTGA TCCAAGTGAC TTTGATGATC ACCCGGAACG GGTCTACAAC
GCCTTGCCGC AAGCTTTGCT GCTGGACAAT CGAGCCACAC GGGTGCTTAT CGTACCGCCG
GATAGAAGTG GCGCAGGGGC GGTCGTTCGT GCCTGGCCGC CAAACAGCAA CATCGCCATC
AACAATGATG TAAAACTCGT CAAAGGCGCG TGCACTGGGC AGACGAATCA GCCGAGTATC
GCGGTTCTGG GGCCTGATAC CAACACACCC ACTTTGAATG TTTCCGGGAA AATCAGCACC
GAATGTCAGC CCGATCAGTT CTACCTGGTG GCGGGTAATG CCAACGACGC ATTTTATTCG
GCATTCAAAC ACCTATTCGA GGGGCAAGGC GGGAAAATCG ATGGCACCTG GGCCGAGGGT
GTTGTGCCGA AAACCGCTGT ATATCTTGTT CAGCACAATT CAGAGAATTT GACCCAATAC
CTGTATCTGC AGAACAAGTG GTCGAACAAC CTGATGGCGC GGCAGATATT TCTCACGATG
GGCGCGGAAA TCAAGGGGGC ACCGGGTACG CTCTTGAAGT CCAAGGCGGT CATTGCCGAT
TGGCTTAAGC GTCAGGGATT CAACTGGCCT GGATTCGATA TTGAAAATGG ATCGGGGCTT
TCGCGCAAAG CCCGTATCAG CCCCAAGGAA ATGGGGCAAT TACTGATGTA CGCATGGCGC
AGCCCAACCA TGCCGGAATT GATGGCTTCA CTCCCGATTG CGGGTATCGA TGGCACCATG
CGCAAGCGAA TGCGAGGCGA GCCAGCGCGC GGGATGATTC ATCTGAAAAC CGGCACATTA
CGCGATGTGC GCGCCGGCGC GGGTTACATC ATCACCCAAT CCGGTCGGCG TTATGTGGTG
GTGATTCTGC AAAACGAACA AAACGTGCAG AACGGCGGCG GCAGCAAAGT GCAGGATGCG
ATTCTCGATT GGCTGTACGA TAACGGTTAA
|
|---|
| Protein sequence | MFLILPRRLR FFLLAAFFLG IGSANIQSAT AAGAVGMPPS VLETLKKQKL SLGDLGIWVQ
AVDSNKPLLT HLPDDLFNPA SVMKLVTSVV ALDVLGTNFQ WTTRVYADAL PVNGVVHGNL
YIKGEGDPWF RSEDLWDLVR QLSDLGIHEV TGKLVLDNSY FDPGPADPSD FDDHPERVYN
ALPQALLLDN RATRVLIVPP DRSGAGAVVR AWPPNSNIAI NNDVKLVKGA CTGQTNQPSI
AVLGPDTNTP TLNVSGKIST ECQPDQFYLV AGNANDAFYS AFKHLFEGQG GKIDGTWAEG
VVPKTAVYLV QHNSENLTQY LYLQNKWSNN LMARQIFLTM GAEIKGAPGT LLKSKAVIAD
WLKRQGFNWP GFDIENGSGL SRKARISPKE MGQLLMYAWR SPTMPELMAS LPIAGIDGTM
RKRMRGEPAR GMIHLKTGTL RDVRAGAGYI ITQSGRRYVV VILQNEQNVQ NGGGSKVQDA
ILDWLYDNG
|
|---|
| |