Gene Hneap_0229 details

Gene Information

• Locus tag: Hneap_0229
• ID: 8533344
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothiobacillus neapolitanus c2
• Kingdom: Bacteria
• Replicon accession: NC_013422
• Strand: +
• Start bp: 241531
• End bp: 242199
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 646382607
• Product: Small-conductance mechanosensitive channel-like protein
• Protein accession: YP_003262139
• Protein GI: 261854856
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0668] Small-conductance mechanosensitive channel

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.727419
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGGTC TTGATCAGTT TTTTCTTGCT TTGGGTCAAT GGTTGAAGGA ATGGCAGGCA 
CTCGTTCCCT TTTTCCTGTT GCTGATTTTC GGCGGCGGCT CGGTATTGCT CGCGCAAAGG 
TTTCTGCGTC GGCATTTCAA CCGAATGGTC AGCCACGCGC CGATTTCACC GGGTACATTG 
CTCATTCTGC GCCGGGCGAT CAGTCTATCG CTTTGGGCTG TGTTGGCTTT GCTGCTGTTA 
CGCCAGGCCG GGGTCAACGT GGACGGCATC TGGACCATGC TCGCCAGTAT GCTGGCCGTG 
ATCGGCGTCG GCCTGCTGGC CGTGTGGACC ATGGTGTCGA ACATCACCGC CAGTCTGTTC 
ATCTGGATCT GGCGCCCCTA CGAACTGGGC GAAACCATCG AAATGCTGCC GAACAATGTC 
AAGGGCCGCG CGGTAGACCG CAGCCTGATG TTCACCACCC TGCGCGAAGC GGACGGCACT 
CTCCTGATGA TTCCGAATAA CCAGTTTTTT CAGAATGTGA CCCGACGCTG GCCCAATAGA 
ACCCGCGTCA CGGACTACGA AGCCTGGGAA GCCGAGCGCA ACTTAGGCGC AGCGGAATAT 
GCCAGTCACC CTGCATCACC GAATCCCGCA GTACCTGACA GCAGCCCTAA GGATGATGTC 
GTGACCTGA 

 

Protein sequence

MSGLDQFFLA LGQWLKEWQA LVPFFLLLIF GGGSVLLAQR FLRRHFNRMV SHAPISPGTL 
LILRRAISLS LWAVLALLLL RQAGVNVDGI WTMLASMLAV IGVGLLAVWT MVSNITASLF 
IWIWRPYELG ETIEMLPNNV KGRAVDRSLM FTTLREADGT LLMIPNNQFF QNVTRRWPNR 
TRVTDYEAWE AERNLGAAEY ASHPASPNPA VPDSSPKDDV VT