Gene Hlac_2460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_2460 
Symbol 
ID7400579 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp2438541 
End bp2439398 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content67% 
IMG OID643709534 
Product3-hydroxyacyl-CoA dehydrogenase NAD-binding 
Protein accessionYP_002567105 
Protein GI222480868 
COG category[I] Lipid transport and metabolism 
COG ID[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGAGC TATCTGACAT CGGCGTCGTC GGCGTGGTCG GGGCCGGCAC GATGGGCAAC 
GGGATCGCAC AGGTCGCGGC GACCGCCGGC TACGAGGTTG TGATGCGCGA CATCGAGTCG
GAGTACGTCG AGCGCGGGCT CGACAGCATC GACGACAGCC TCGCCCGGCT CGACGAGAAA
GGCCGGCTCG ACGAGGACCC AGCGGCGATC CGCGACCGGA TCGAGGGGAC CACTGACCTC
GACGCCCTCG CGGCCGCGGA CGTGGTCGTC GAGGCCGCCG TCGAGAACCT CGACGTAAAG
AAAGACATCT TCGCCGACCT CGACGGGGTG ACCGACGACG ACGTGGTGCT CGCGACCAAC
ACCTCGACGC TGTCGATCAC GACCATCGCG AGCGCCACCG ACCGCGCGAG CGACGTGATC
GGGCTCCACT TCATGAACCC GGTCCCGATC ATGGACGGCG TGGAGGTTGT CGTCGGGGAG
CGCACCGCCG ACCCCGTCGT CGACTTCGCG CACGCCTTTG CCGAGGACCT CGGCAAGGAG
ACGTGGGAGG CCGACGACAA GCCCGGCTTC GTCACGAACC GGATCCTGAT GCCGTGGATC
AACGAGGGCG TCCGCGCGTA CGACGAGGGC GTCGCCGACA GGGAGGACAT CGACCGCGGG
ATGACACTCG GCACGAACGT CCCGATGGGA CCCCTCGAAC TCGCCGACCA CATCGGGCTC
GACGTGGTGT TGGACGCCAG CGAGACGCTC CATACCGAGC TCGGCGACCG GTACAAGCCG
GCGTACCTCG TCAAGCGCAA GGTGGAGGCC GGTGACCTCG GCAAGAAGAC CGGGAAAGGG
TTCTACGAGT ACGAGTAA
 
Protein sequence
MRELSDIGVV GVVGAGTMGN GIAQVAATAG YEVVMRDIES EYVERGLDSI DDSLARLDEK 
GRLDEDPAAI RDRIEGTTDL DALAAADVVV EAAVENLDVK KDIFADLDGV TDDDVVLATN
TSTLSITTIA SATDRASDVI GLHFMNPVPI MDGVEVVVGE RTADPVVDFA HAFAEDLGKE
TWEADDKPGF VTNRILMPWI NEGVRAYDEG VADREDIDRG MTLGTNVPMG PLELADHIGL
DVVLDASETL HTELGDRYKP AYLVKRKVEA GDLGKKTGKG FYEYE