Gene Hlac_1998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_1998 
Symbol 
ID7402017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp1992852 
End bp1993181 
Gene Length330 bp 
Protein Length109 aa 
Translation table11 
GC content65% 
IMG OID643709069 
Producttranscription termination factor Tfs 
Protein accessionYP_002566646 
Protein GI222480409 
COG category[K] Transcription 
COG ID[COG1594] DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS 
TIGRFAM ID[TIGR01384] transcription factor S, archaeal 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.816482 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.168417 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTTCT GTGACGACTG CGGCTCGATG ATGGTCTCTC GCGACGGGGA GATGGTGTGT 
CAGAACGACG ACTGCGGCGC CACCACCGAG CGCGACGAGG CGCTCGCCGC CGAGTTCGAG
TCGACGACCG AGCAGACCGG CGACGAGGTG ATCGAGACGG AGGAAGGCGC GAACTTCGAG
GGGAAGCCGA CCGCTAAGGA CATCGTCTGT GACAAGTGCG GCCACGGCGA GGCGTGGTAC
ACGATCAAAC AGACCGGCGC CGCCGACGAG CCCCCGACGC GCTTTTTCAA GTGCAAGGAG
TGCGGCCACC GCTGGCGCGG GTACAACTGA
 
Protein sequence
MQFCDDCGSM MVSRDGEMVC QNDDCGATTE RDEALAAEFE STTEQTGDEV IETEEGANFE 
GKPTAKDIVC DKCGHGEAWY TIKQTGAADE PPTRFFKCKE CGHRWRGYN