| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1626 |
|---|
| Symbol | |
|---|
| ID | 7399575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1646446 |
|---|
| End bp | 1647129 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643708692 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
|---|
| Protein accession | YP_002566281 |
|---|
| Protein GI | 222480044 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.695636 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTACGACG CCGTCGTCCT CGATAAGGAC GGAGTCCTCG TCGGTCGGAC TCCGTTCGAC
ACCCTCAGGG AGGCCGCCTG GGACGCCTTC GTGAGCCTCG GCATCGAGGA CCCGGATCTG
GCCCACGTCG ACGACATCGC CATCGGCGTC GACCCCGCTA CTCTGACGGA TATCTGCGAG
CGCTACGGGC TCGACCCGGT CGAGTTCTGG CGGGTTCGCG ACGAGACCGC CGCGGCCGCG
CAGGTCGACG CGGCTCGGAA GGGGCGGAAG ACCCCCTACG ACGATGTCGA CGCGCTCCGC
CATCTCGACG CCTCGCTCGG GGTCGTCTCC TCGAACCAGC AGGCAACCGT CGACGCGGTC
CTCGACCACT TCGGGCTCTC CGGGCGGTTC GAGGTCGCAT ACGGCCGTGA GCCCTCCATC
GCCAGCCTCT CGCGGAAGAA GCCGTCGCCG TACTACATCG AGCGCGCCCT CGAAGACCTC
GGCGCCGAGA CCGCGATTTT CGTCGGCGAC AACGAGTCGG ACGTGCTCGC CGCCGACAAC
GCCGGGATCG ACTCCGCGTT CGTCCGGCGT CCGCACCGAC GCTCGACCGA GCTCTCCTGT
CAGCCCACCT ATGAGATCGA CGACCTCCAC GACCTCGTGA GCATCTGCGG GCGGACGCCG
GTCGACACCG ACGAGAAAAT CTGA
|
|---|
| Protein sequence | MYDAVVLDKD GVLVGRTPFD TLREAAWDAF VSLGIEDPDL AHVDDIAIGV DPATLTDICE
RYGLDPVEFW RVRDETAAAA QVDAARKGRK TPYDDVDALR HLDASLGVVS SNQQATVDAV
LDHFGLSGRF EVAYGREPSI ASLSRKKPSP YYIERALEDL GAETAIFVGD NESDVLAADN
AGIDSAFVRR PHRRSTELSC QPTYEIDDLH DLVSICGRTP VDTDEKI
|
|---|
| |