Gene Hlac_1602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_1602 
Symbol 
ID7399551 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp1620482 
End bp1621390 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content68% 
IMG OID643708668 
Producthypothetical protein 
Protein accessionYP_002566257 
Protein GI222480020 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1503] Peptide chain release factor 1 (eRF1) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0714665 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACA GGCTGCTCGG ACGCGCCGGG CTGAAAGAGC GGATCGAGGA GTTGGAAGAG 
GAGAAACGCC ACCTCGAACG CCGCGCCGAG GCCGAAGAGC AGCGCCGGTC CGACGCGGTC
GCCGACCGCC AGCGCGCCGA GGAGCGCGTC AACGAACTCG AACACCGGAT CGAGTCGCTG
GAGGAGCGCC TCGACCGCAC CGAAGGCGCG GAGGAATCGG TCGAGTTTCG GCGCGTCAGC
GATCTTCACG ATCCACGACT GGCCGATGCA CTCGGGCGTT TCCGCGCCGT CGAGAGCGAC
GACCCCGAAG GGCTTCTCAC CGCCTTCGTT CCGGACGACG ACGCGGTACC GTCGAGCGTC
GCGGAGTGGT TCGGCGACCG AACCCGTCTC GTCCGACGAG CCGCTCCCGC AGTCGTCATC
GCCGACGACA CCGGCGCCGT GAGCGCGGCG CTAACGCCCC CGATCGAGCC GGCACCGTTC
GACCGGTGGA GCGACCGGTT CCGACTCGAC GAGTCGTGGT TCCGCCCGAC CGGACGATTC
GCCTTCGCGC TCGTCCGGTC GGACACCTTC GCGCTCGGTG TTTACGAGGG CGACGAGCGG
GTCGCGTTCG AGGGGTTCAC CTCCGACGTG AAGGAGGCGC ACTCGAAGGG CGGCTTCTCG
CAGGGCCGGT TCGAGCGCCG CCGCGAGGGA CAGATCGACG AGCACCTGAA GAAGGCGACC
GCAGCGCTGG CGGATCTCGA CGCCAATGCC CCGATCGATC GGACGATCGT CGTCGGTGAG
CGAAGCGTGC TGGGCGAGGT CAGAGAGCAC GCCGACATCA CCGATGTCTC CGACGCGACC
GGGAAGCCGC GAAACGCGCT CGACGACGCG TTCCATGACT TCTGGATGAC GCGGATCCGC
GCGATCTGA
 
Protein sequence
MIDRLLGRAG LKERIEELEE EKRHLERRAE AEEQRRSDAV ADRQRAEERV NELEHRIESL 
EERLDRTEGA EESVEFRRVS DLHDPRLADA LGRFRAVESD DPEGLLTAFV PDDDAVPSSV
AEWFGDRTRL VRRAAPAVVI ADDTGAVSAA LTPPIEPAPF DRWSDRFRLD ESWFRPTGRF
AFALVRSDTF ALGVYEGDER VAFEGFTSDV KEAHSKGGFS QGRFERRREG QIDEHLKKAT
AALADLDANA PIDRTIVVGE RSVLGEVREH ADITDVSDAT GKPRNALDDA FHDFWMTRIR
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