Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_0987 |
Symbol | |
ID | 7401881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | + |
Start bp | 978271 |
End bp | 978987 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643708052 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_002565654 |
Protein GI | 222479417 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGTCGTCG GGTACCTGCT CACGGCGGTC GCCGAGCGCC TTCCCCGCCG ACGGATCAGC ATCAAGATTA TTATTCCGAT CGCGCGGGTT CTCATCTTCG GAACCGCGGC GTATCTGGTC TTGGGACCGT TGCTCCGACT ATCGGCCGCA CAGTTGCTCG CAGTGTCGGG ACTGTTCGGG GCGGCTCTGG GGTTCGGCCT GAAGGACCTC TTCGCGGGGA TAATCGGTGG GCTGGTGCTC GTGACCGAGC GTCCCTACCA GGTCGGCGAC AAGATCACCA TCGACGACGA CCACGGCGAG GTAACCGACA TCGACCTCCG GGCGACGACA CTGAGGACGC CCGACGACAG CGCCGTAAGT GTCCCGAACG CAACGATGTT CACTGCGAAC GTCTCGAACG CCAACAACGG CCAGCCGGAG ATGATGGTCG TCGTTGAACT CGCGGTCACT GCCTCTGCTG ACGTCGAACG AGTGAGTGCG ATCGTCAAGG AGGCCATGAT GACCTCGAAG TACGTCTACG TCGACGACGA CCACCCGTTC GTGGTCCTGA TCGAGGACGA GTCCTACTAT CGGACGATTC GCGGCAAGGC GTATGTGGCC GACGTGCGCG ACGAGTTCGC ATTCGCCTCA GACGTGACAG AGCGCTCGAT GGCCGTCTTC GACAGCGAAG GGGTCGAAAT GCCCGAGGCG CCCGTTCACG TCTCCGAACA CCGCTGA
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Protein sequence | MVVGYLLTAV AERLPRRRIS IKIIIPIARV LIFGTAAYLV LGPLLRLSAA QLLAVSGLFG AALGFGLKDL FAGIIGGLVL VTERPYQVGD KITIDDDHGE VTDIDLRATT LRTPDDSAVS VPNATMFTAN VSNANNGQPE MMVVVELAVT ASADVERVSA IVKEAMMTSK YVYVDDDHPF VVLIEDESYY RTIRGKAYVA DVRDEFAFAS DVTERSMAVF DSEGVEMPEA PVHVSEHR
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