| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0218 |
|---|
| Symbol | |
|---|
| ID | 7402147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 235976 |
|---|
| End bp | 237970 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 643707281 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_002564893 |
|---|
| Protein GI | 222478656 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1955] Archaeal flagella assembly protein J |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.444432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0181412 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGG AGCCACAGAG AGGAGCCGAC GCCGCGGGAG GCGGCCGCGC CCTCGACGCG
GCCGAGGCCG ACGGGTTCAC GCGGACCAGC GGCTCCTCGG TGGTCGACCG CGTGCTGTAC
GCTCTGTTCG CACGCCACGC GAGCGACCGC CGGCACGACG CCGACCGGAA GCGGTACCGT
GGGACTGCGC TCGACACGGG GTTCGAGACG CATTTGGCGC GGGTGTACGG GCTCTCGTGG
CTCGTCTGCG TTGCCGTCAT CGTCCCGGCG CTGCTTGTCG CCGCGTCGAC CGTGCCGGGG
TTACTCGCGG CGGCCGACGC CTGGATCGGC GCGCGTTCGC CGGTCCCGAT CGGGTCGCTG
TCGCCCGAGC GCGTTGCCGT CGTCGCCGCC GGCCTCACCG GGTTCCTCGC GAAGCGCGCA
ACGGTGCGGC TCGGTGGGCT CCACCTCCGG TGGCTCACGG CGACGCGCCG GACCGACATC
GAGCGGACCC TCCCGCCCGC GGTCCGCTAC CTCGAACTAC TCGCGGCCGG GAGCGACGGC
CCCCGGAAAA TGGTCGAGAA GGCCGCCGCG AACGACGCGT ACGGCGGGAC CGCCACCTCG
CTACGGAAGG CGCTCAACGC CGCGCGACTC GCCGGGAGCC TCGACGAGGG ACTGCGTCGG
GTCGCCCGCG ACACGCCCTC GCGAGAGCTG CTCGCGCCGT TCCTCCTGAA GTTCCGCAAG
CACGCGGCGA CTGGCGACGC GGCGCTCGCG GAGTACCTCC GGACGGAGAG CCGGATGCTC
GCGCACCGGC AGGACCGGGC CCGCAAGCGC GCCCGGCGAT TCCTGGAGCT TCTCACCGAA
CTGTTCGTCG TCGTGTTGGT GTTGCCGGCG CTGCTCGTCA TCGCGGCGAC CGCGCTCACG
GTCGTCGTCC CCGAGCTGCT CCCGCCGGTC GACACGCCGG TCGGCGTGGT GCCGACGCGG
GCGGTCGTCC TCTACGGCGC CGTCGTCTTT CTCGTTGCTA TCGGCCTCGT CGGTGCGGTC
GCGGTCGGCA CGCTCCGCCC GCCGAACCAG CGCGCGAGCT ACGACTTGCC GGCGTTCCCC
CGCAAAATCC TCGCCTCGGC CGGGCGCAAT CCGTCGAGCG CCGCGGTCGT CTGCGCGCCG
CCCGCGGCGC TGCTCGCGGT CGGGCTCGCG TTCGCGGGGT ACACTCTCGT CAACGTCGCG
CTGCTCTCGT ACGCGGCGTT CGCGGTTCCC GTCGGCGCCG TCGCGGGGAG ACGCACCCGG
ATCGACGACG CGAAGGACCG CGAGCTGGCG GACTTCGTCC ACGCCGTCTC GGGACACGTC
GCGCAGGGGC GGCCGTTCCC CGCGGCGGTC GAGGCGGTCG CGCGCGACGT GGACCTCGGC
GTGCTCGACG ACGACGTGGC CGACCTCGCG TTCGCGCTCC GGTCGACGAC CGCGACGGGG
GGTGCGGGGA GTACGGAGCG TGCGAGAGAC ACGGGGAGTA CGGGTGCGTC GGCACAGTCG
CCCGGCGTCC GCGCGGCCGC GATCGATCGG TTTGTCCAGC GCGTCGGAAC GCCGCTGGCC
GAGGGGACAC TCGGGCTCGT CACCGACGCC TTAAACGCCG GGAGCGACGC CGACGCCGTC
TTCGAGACGC TTCGGATCGA GGTCGGCCGG CTCTACAGCG AGCAGCGCGC GCTCCGCTCG
TCGATGCACC CCTACGTCGC GGTCGGCTGG GCGGCGGCCG CGCTGGTCGC GGCGGTCGTC
GCCGTCGTCA ACACGCAGGT GATCGACGCC GCGCACCTCG CCGACCTCGC CGGGGCAACC
GATTTCGTGG CCGAGCCGGA GACGGTGCTT CCGGAGCTGG AGCGCTTCCG GCTGTACGTC
GTCACGCAGG CGACGATGCT CGCCTCGGGC TGGTTCGCCG GCACCGCCTC CCGCGGACGC
TACGCGGCGC TGTTCCACTC CGGGCTGCTC GTGGCGATCT GCTACGCGGT GTTCACCGCG
GGCGGGCTGG TGTGA
|
|---|
| Protein sequence | MSGEPQRGAD AAGGGRALDA AEADGFTRTS GSSVVDRVLY ALFARHASDR RHDADRKRYR
GTALDTGFET HLARVYGLSW LVCVAVIVPA LLVAASTVPG LLAAADAWIG ARSPVPIGSL
SPERVAVVAA GLTGFLAKRA TVRLGGLHLR WLTATRRTDI ERTLPPAVRY LELLAAGSDG
PRKMVEKAAA NDAYGGTATS LRKALNAARL AGSLDEGLRR VARDTPSREL LAPFLLKFRK
HAATGDAALA EYLRTESRML AHRQDRARKR ARRFLELLTE LFVVVLVLPA LLVIAATALT
VVVPELLPPV DTPVGVVPTR AVVLYGAVVF LVAIGLVGAV AVGTLRPPNQ RASYDLPAFP
RKILASAGRN PSSAAVVCAP PAALLAVGLA FAGYTLVNVA LLSYAAFAVP VGAVAGRRTR
IDDAKDRELA DFVHAVSGHV AQGRPFPAAV EAVARDVDLG VLDDDVADLA FALRSTTATG
GAGSTERARD TGSTGASAQS PGVRAAAIDR FVQRVGTPLA EGTLGLVTDA LNAGSDADAV
FETLRIEVGR LYSEQRALRS SMHPYVAVGW AAAALVAAVV AVVNTQVIDA AHLADLAGAT
DFVAEPETVL PELERFRLYV VTQATMLASG WFAGTASRGR YAALFHSGLL VAICYAVFTA
GGLV
|
|---|
| |