| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0125 |
|---|
| Symbol | |
|---|
| ID | 7401646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 132752 |
|---|
| End bp | 134467 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643707189 |
|---|
| Product | von Willebrand factor type A |
|---|
| Protein accession | YP_002564801 |
|---|
| Protein GI | 222478564 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.178394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACA ACGACAACAT CGACACAATC GGACTTTCGC GGCGCACGCT GCTGGCGGGC
CTCGGCGCGA TCGGCGTGGC CTCAGCGGGG GCTGGGCTCG GGACGACGGC GTACTTCAAC
GACACCGAGT CGTTCGAGAA CAACACGCTC ACCGCCGGCC AGCTCGACCT GCTCGTCGAC
TGGCAGCAGA CGTACGACTT CGGCGATGGC CATCAGTTCG TCAGCGCGCA CCCGGACCAC
GACGGCGACG GGGAGCAGTC GATCGCCGCT GACAACGACG CCGGAGAGAT CAAGTACAGC
GACTTCCCGG ACGACGAGGA CGAAGACAGC AACGGGGCGA ACATCCCCGT CCTCGACTGC
GAGACCATCC CGCCGCTTTC GGAGGCGGAC TTCGGCACGG ACCCCGTCAC CGGCGAGGAG
ATGGAGACGC TCGTCCAGTT CACCGACGTG AAGCCCGGCG ACTCGGGCGA GATCACCTTC
TCGTTACACC TCTGTGACAA CCCCGGCTAC ATCTGGATGC AGGCGGGCAA CGTCAGCGAT
GAGGGCGGCG CGTTCACGGA GCCGGAAGAC GTCGCTGCCG GCGAGAACGC CGCCGACCTC
GCGGACGCCA TCGACGCGAA GCTCTGGTAC GACGAGGACT GCGACAACGT TCACGACGAC
GCGGGACCGA TCGACATCAT GCTCACGCTC GACTTCTCGG GGTCGATGCT GTACGACCAG
TACGGCGGCG TGGTGAGCAC GGACCCGATC CAGGTCGACG GCCAGAGCTA CGGCGAGACG
ACGAAGATCG ACCTCGTCGA GCTCGGCACG CGGCAGTTCA TCGACTACCT GCAGGCGCAG
AATGCCGACG TGCAGGTCGG CGTCGTCTAC TTCGACGGCG AGGGGAGCGG CGAGAACACC
CCTCGGACCG GCATCCTCGA ACCGCTAACG ACCAACCTCT CGGCGGTCGA CACCGCGCTG
TCGAACCTCC GTCAGAAGCT CGCGAACGTT GTGAGCGACG CGGCCCCGTC GACGCCGTTC
GACAACGACG GGAACCCGGA CCCGTACTCG AACGCCGACG GCATCGCCAC GGGCACCTAC
ATCAGCGAGG GGCTCGACGA CGCGCAGACG GAACTCGCCA GCAACGGTCG AGCGAGCGCG
GAAAAGCGGA ACATCGTCCT CTCGGACGGC GAGTCGTTCA ACGGCGACGG GAACACGAAC
TACGCGCCGC CCGCGAGCGC CGCGGCCAAC GCCCGCGCCG CGTCCCCGGC GCCCGCGACC
GACGTGTACA CGATCAACGT CAACGGCAGC GCCAGCACGC TCCAAGCGAT GGCCGGCCCG
GCCGGCGGCT CGGGCGGCGA TCCCGTGTTC TTCAACGACA TCAACGACCC GCTCAACATC
CCGACGGTGT TCGGCAACCT CGCCGCACAG ACCGTCGCGG AGAAGGTCAT CATGGAGGAC
ACGCTCGCGA ACGTCCTCGA CGCGCTCGCG GACGGGAACG GCGTCCCGCT CGACGGGAAC
CGTGCGACGC TGTACGACGA ACTCAGCGAC GACCCCAACG ACCCGGACCG CGAGGCGTTC
CGCGGTGACG GCGTGATGCA CTGCGTCGCG CTCTCGTGGG AGCTCCCGTT CGACGTGGGC
AACGAGATCC AAGGCGACAC GCTCAGATTC GACCTCGGGT TCTACACCGA ACAGGCGCGC
CACAACGACG GTACCGGTCC CGATCTGCCG GCCTGA
|
|---|
| Protein sequence | MADNDNIDTI GLSRRTLLAG LGAIGVASAG AGLGTTAYFN DTESFENNTL TAGQLDLLVD
WQQTYDFGDG HQFVSAHPDH DGDGEQSIAA DNDAGEIKYS DFPDDEDEDS NGANIPVLDC
ETIPPLSEAD FGTDPVTGEE METLVQFTDV KPGDSGEITF SLHLCDNPGY IWMQAGNVSD
EGGAFTEPED VAAGENAADL ADAIDAKLWY DEDCDNVHDD AGPIDIMLTL DFSGSMLYDQ
YGGVVSTDPI QVDGQSYGET TKIDLVELGT RQFIDYLQAQ NADVQVGVVY FDGEGSGENT
PRTGILEPLT TNLSAVDTAL SNLRQKLANV VSDAAPSTPF DNDGNPDPYS NADGIATGTY
ISEGLDDAQT ELASNGRASA EKRNIVLSDG ESFNGDGNTN YAPPASAAAN ARAASPAPAT
DVYTINVNGS ASTLQAMAGP AGGSGGDPVF FNDINDPLNI PTVFGNLAAQ TVAEKVIMED
TLANVLDALA DGNGVPLDGN RATLYDELSD DPNDPDREAF RGDGVMHCVA LSWELPFDVG
NEIQGDTLRF DLGFYTEQAR HNDGTGPDLP A
|
|---|
| |