| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1906 |
|---|
| Symbol | |
|---|
| ID | 4710807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 2099951 |
|---|
| End bp | 2102032 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639856379 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001003472 |
|---|
| Protein GI | 121998685 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC ATGAACCAAC GGCTGTGCGC CTGTTAGGCG CCCTGCTGGC TGCGGCGGTC
TCGGTACCGG CCGGGGCCGC GGAGGAGGGC GATGAGCACG CGTCCTCCAC CAGCCTCTCG
CCGGTGCGCA TCGAGGCCGG CGGCGATCCC CTGGGCCGCG GCGTGGCCAG CGAAGCCCTG
CAGCGCCGCC AGGCCTCGAG CAGCGCCGAG ATCTTCCGCG GCGAGGCCTC GGCCGGGGTC
GGCGGTGGCA GCCGCAACGC GCAGCGGCTC TACCTGCGCG GTGTCGAGTC CAACAACCTC
AACGTCACCG TGGACGGGGC CCGCCAGGGG CGGGACCTCC ACCAGCACCG CGGCGGCCTC
ACCGGTCTGG ACCCGGATCT GCTGCGGGCG GCCGATCTCG ACCCGCGTCC GGCGGCGGAC
CAGGGCCCCG GTGCGCTGGG CGGTTCGGTG CGCTTCGAGA CGGTGGACGC CCAGGATCTG
CTCGACCCCG ACGAAGAGAC TGGGGCCCGC CTGCGCGCCG GCTACGCCAG CGCCGACGAG
GCCGAGCGCG GCTCGGCCAC CGCCTTCGGC CGGCTGGGCG GCGACTGGGG CGCCCTGGCC
CATATCGGTG CGGTCAACCG GGACGACTAC CGGGTCGGCG GCGGCGACAC CATGCCGTAC
TCCGGCGGGC GCGATCGCGA CTACCTGGCG CGCATCAGCC GCGTGCCGGC ATCGGGCCAT
CAGCTGCGTC TCGGCGTGCA GCGCAACACC TTCGAGGGGG ATCACCATTA CGGCTCCTGG
GGCAGTGACT TCGGTGATCC GAGCGAGACG ACACGCCAAG ACCCGGTGGG CCAGGAGCAG
CGCCGCGACA CCTGGACCGC CGAGCACCGC TACCGCCCGG CCGACCCCCA CGTGGACTGG
CAGGCCCGGG TCTACCGCAA CGACAACCGC CTGGAACGCC AGGACGACAA CACCACCACC
CGCGCCGTCG AGCAAGGCGG CGACCTGCGC AACACCTTCA CCCTGGACGC CGGGCCGACC
CGTCACCGGC TCACCGCCGG TTTCGACTAC TACACCGAGG ACGGGCGCAG CGACCCCCAC
GGAGGCGGCT CGAGGCTCAG TCACCAGTCG CGCAACTTCG GCGCCTTCGT GCAGAACCGC
ATGGCCTGGG AGCGGTTGCG CCTCTCCGCC GGGCTGCGTT ACGACGACTA TGTCACCGAC
CTGCAGGAGG AGACCCTCCA AGGCGATGCC GTCTCGCCCA ACTTCAGTGC GGAGTACGAC
CTGACTGCCG GGTGGACCGC CTTCGCCGGC TACGGCGAGG CGGTCAGTGG CGCCGGGATC
CTGCCGATCG GCTGGCTGGC CTACATCGAC GACGAAGAGA CCAATCTGAA TGACGGCGAG
CCGTTCGAGG CCGAGGAGTC CCGCCGGCGC GAGGGCGGCC TGCGCTACCA GGGGCGGGAT
CTGATCACGG CCCGGGACCG CTTCGACTTC GAGGCGACGC TCTTCGAGAC GCGGATCAAA
AACAGTGTTG AGCGGGATGA CCCGTGGGGC ACACCGCACC AGCACAACCT GCCGCCCGAT
AGGCGACATG ACGCGTTCTG GGATGAGGAC GCCCCGCTGG TTGGGGGCGT CCGCAACCGC
CCCGATCCGG TCCGCCTGCG CGGCTACGAA CTGCGCGCCG CCTGGGGCGT GGGCCCCTAC
GACGCCCGGC TTTCGTTCCT CAGCGCCGAG GCCGTGGACG ACGACGGCGA CCCGGTGGGG
GTGATCCGGC GCCTGGGTGG GGGCGGCGGT GACCGTCTGG TCTTCGATCA GCGCTGGGCG
GCCCACGAGA CCCTGACCCT GGGCTACACG CTCACCTGGG TGGGGGATCA CACCGACGTC
CCCGACGACG AGCCGGAGCG CGACGGCTAC CAACTCCACG ACGTGCAGGC CGAGTGGCAG
CCGTGGGCCG ACGACCGCCT GACCCTGGCG CTGGCGGTGA ACAACCTCTT CGACGAGCAG
TACGCCGAGC ACACCTCCCT GGCGGTGGAG GAGAACGACG AGTGGCAGAT TCGCGACGAG
CCCGGCCGGG ACGTTCGGGT GACCGGCACC CTGCGCTTTT GA
|
|---|
| Protein sequence | MNTHEPTAVR LLGALLAAAV SVPAGAAEEG DEHASSTSLS PVRIEAGGDP LGRGVASEAL
QRRQASSSAE IFRGEASAGV GGGSRNAQRL YLRGVESNNL NVTVDGARQG RDLHQHRGGL
TGLDPDLLRA ADLDPRPAAD QGPGALGGSV RFETVDAQDL LDPDEETGAR LRAGYASADE
AERGSATAFG RLGGDWGALA HIGAVNRDDY RVGGGDTMPY SGGRDRDYLA RISRVPASGH
QLRLGVQRNT FEGDHHYGSW GSDFGDPSET TRQDPVGQEQ RRDTWTAEHR YRPADPHVDW
QARVYRNDNR LERQDDNTTT RAVEQGGDLR NTFTLDAGPT RHRLTAGFDY YTEDGRSDPH
GGGSRLSHQS RNFGAFVQNR MAWERLRLSA GLRYDDYVTD LQEETLQGDA VSPNFSAEYD
LTAGWTAFAG YGEAVSGAGI LPIGWLAYID DEETNLNDGE PFEAEESRRR EGGLRYQGRD
LITARDRFDF EATLFETRIK NSVERDDPWG TPHQHNLPPD RRHDAFWDED APLVGGVRNR
PDPVRLRGYE LRAAWGVGPY DARLSFLSAE AVDDDGDPVG VIRRLGGGGG DRLVFDQRWA
AHETLTLGYT LTWVGDHTDV PDDEPERDGY QLHDVQAEWQ PWADDRLTLA LAVNNLFDEQ
YAEHTSLAVE ENDEWQIRDE PGRDVRVTGT LRF
|
|---|
| |