| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1868 |
|---|
| Symbol | |
|---|
| ID | 4711201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 2042371 |
|---|
| End bp | 2043276 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639856340 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001003434 |
|---|
| Protein GI | 121998647 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGGTG GGTTGTTGCT CGCCCTGATC TTCGGCGTGG TCTTCACGGC GGCGGGCACG
TACCTCGGTC CCGACGTGCC TGCCGCGGCG GGGGGGAGCA TGTCGCCCAC CTTGCTGACC
GCCCATCCTT CGCTCGGCCA CGTCCCGCAA CTGCCTGAGA CCGGATACCA GCGGAATCTA
CCCGGATCAT CCCCCTATGT CGTTGCCTTC ATCTCGGCTG GTACGGCGCT TGGTGTGGCG
GCGTTGTTCG GCCTGTGGCT GCGCCGTCAG CTGGTGGCTC CGTTGCACGA GGCGGCGGTG
TCCATCGAGT CCGGGGGGCC GGTGCGCCTG CGTGGTATTG CCGGAGCCGT GCGTGAGCTG
CGGATGGTCG AGGAGCGCTA CAACCGCGCC CGGGAAGCCA TGGAGCAGCG GATCGTGGAG
CTCGACCAGC AGCTGCATGT CGATTGGCTG ACCGGTCTGA CCAATCGGCG CGGTCTGGAG
CGGGCCCTGG AAGTAGAGCT GGAGCGGGCG CGGCGTTCGG CGGCGCCGGT CAGTCTGATC
TTCCTCGATC TGGATGGTTT CAAGGCCCTC AACGACGAGC GTGGCCACCA GGCCGGCGAT
GAGGCACTGC AGCAGGCGGC CGAGCTGCTC AAGTCCCGGG TTCGGGAGAC GGACGCCGTG
GCGCGCTGGG GCGGGGATGA GTTCGTGATC CTCTGCCGCG ACACCGACCA GGCGGGCGCC
GAGGTCGTTG CTCGCGCCTT GGCACTGCGT CTGGCCCAGT GCCCAGGGGT GCCCGGGGGG
TGTCGGGCGA GTGTCGGGGT GAGTGCCTGG CGAGCCGGGG ATTGTGCCCG GGAGCTCATG
GCCCGGGCCG ACGGTGCCAT GTACGACGCC AAGCGGCGAG GGGGCGGCAG CATCTGCGTC
AGGTGA
|
|---|
| Protein sequence | MLGGLLLALI FGVVFTAAGT YLGPDVPAAA GGSMSPTLLT AHPSLGHVPQ LPETGYQRNL
PGSSPYVVAF ISAGTALGVA ALFGLWLRRQ LVAPLHEAAV SIESGGPVRL RGIAGAVREL
RMVEERYNRA REAMEQRIVE LDQQLHVDWL TGLTNRRGLE RALEVELERA RRSAAPVSLI
FLDLDGFKAL NDERGHQAGD EALQQAAELL KSRVRETDAV ARWGGDEFVI LCRDTDQAGA
EVVARALALR LAQCPGVPGG CRASVGVSAW RAGDCARELM ARADGAMYDA KRRGGGSICV
R
|
|---|
| |