| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1445 |
|---|
| Symbol | |
|---|
| ID | 4711373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 1557237 |
|---|
| End bp | 1558187 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639855912 |
|---|
| Product | 5-carboxymethyl-2-hydroxymuconate delta-isomerase |
|---|
| Protein accession | YP_001003014 |
|---|
| Protein GI | 121998227 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCGA GTGCACCACC GTCGACGCAC GGCGCCATTT GCGGGACAAT GGCGATTGGC
AGGCCCGATC GCAACCCCAC ACGCGGAAAC GGCACCATGC GCATCACCAC CGTCCGTCAT
CAAGGCGTTT CCCGGATCGC CGTTCACGAG CAGGGCGACC GCTGGGCGGT ATCCCCCACT
CCCGGGGATC TGGGTGAACA CCTATGCGCC GGCACCGTCC CCGAAGCCGG CTACGACTGG
CCACGGGTCA CCGCCGAGGC CCTGACCTTC CTCGCGCCTC TGCCACACCC ACCGCGCAAT
GTGATCTGCC TCGGGCTGAA CTACGCCGAC CACGCCCGGG AATCCCAGCA GGCCAAGGGC
GATGAGCTCG CCCTGCCCGA AGCCCCGGTG GTCTTCACCA AGGCAACAAC CAGTGTCGCC
GGTCCCTACG ACGATTTCAT CCTCGACCCG TCCGTCACCA GCGAGCTGGA CTGGGAGGTG
GAGCTCGCGG TCGTCATAGG CCGGGGCGGA CGACACATCC GCGAACAGGA CGCCCTTCAG
CACGTCTTCG GCTACACCGT CGTCAACGAC CTCTCCGCGC GGGACCTGCA GTTCCGACAC
AAGCAGTTCT TCCTCGGCAA ATCGGTGGAC GGCAGCTGCC CGATGGGGCC CTGGATCACC
ACCGCCAATG CGGTGCCGAA CCCCCACAAC CTCGCCCTCT CCTGCCGGAT CAACGACACC
ACCGAGCAAC AGTCGCACAC CGGCGAGATG GTCTTCTCCA TCCCCAGGAT CATCGCCGAG
CTGTCACGGG TCATGACCCT GATCCCGGGG GATATCATCG CCACCGGCAC CCCCGCCGGC
GTCGGCTTTG CGCGCACGCC GCCCCGCTTC CTGCAGGCCG GCGATATCGT GACCTCCGAG
GTCGAGGGAC TCGGTACGCT GCGTAATCGC ATTGTGGCAC CGGATTCGTG A
|
|---|
| Protein sequence | MAPSAPPSTH GAICGTMAIG RPDRNPTRGN GTMRITTVRH QGVSRIAVHE QGDRWAVSPT
PGDLGEHLCA GTVPEAGYDW PRVTAEALTF LAPLPHPPRN VICLGLNYAD HARESQQAKG
DELALPEAPV VFTKATTSVA GPYDDFILDP SVTSELDWEV ELAVVIGRGG RHIREQDALQ
HVFGYTVVND LSARDLQFRH KQFFLGKSVD GSCPMGPWIT TANAVPNPHN LALSCRINDT
TEQQSHTGEM VFSIPRIIAE LSRVMTLIPG DIIATGTPAG VGFARTPPRF LQAGDIVTSE
VEGLGTLRNR IVAPDS
|
|---|
| |