| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1433 |
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| Symbol | truD |
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| ID | 4709204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1545510 |
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| End bp | 1546526 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639855900 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001003002 |
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| Protein GI | 121998215 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.733655 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCCGGG CCCACGGCGG ACCCTTGGGC ACGGCGCGCC TGCGCGCCTG CCCCGAGGAC
TTCCGCGTGG ATGAGCAGCT GCCGTTTCAG CCCTCCGGGG TGGGCGAGCA CTGCCTGATC
CAGGTTTGCA AACGCGGCTG GACGACCGAG GCTGTCGCCA AGATATTGGC GGCTCGGGCG
GGGGTGTCGC GGGGCGCCGT GAGCTTTGCC GGTCTCAAGG ACCGGCACGC AGTGACCACC
CAGTGGTTCT CGGTGCATGC GCCGAAGGCG TGCCCGGCGC TGCTGCCGGG ATGTTTAGAG
GACGGCGTCG AGATCGTTGC GGCTACCCGC AACGCCCGCA AGCTGCGCCG CGGCGCGCTC
GGCGGCAACC GCTTCCGCCT GCTGGTTCGC GAAGTATCGG CGCCGCGTCG GGCGGTGGAG
CGCCGCCTGC ATGCCATTTC CCGGCGGGGC GTCCCCAACT ATTTCGGGCC CCAGCGTTTC
GGGCGCGGGG GGCGCAACCT GCAGCAGGCG CGGGCCTGGT TGCTCGAGGG CGAGCCGGTC
CGAGGTCGTA CCGTGCGTGG GCTACTGATC TCTGCGGTGC GTTCGGATCT GTTCAACCGA
GTGCTGGCCC GGCGGGTGGC AGCCGGTACC TGGGATACGT TGCTGGCCGG AGAACGGGCG
GCGCTCGATG GAACCGGTAG CCATTTTCCG GTGGTGGCGG TGGATGCCCC CCTCCGGCGG
CGTGTCGCCC AGGGGGATGT CCATCCCAGC GGGCCTTTGC CCGGGGTTGG TGGGGATCGG
CCGGAAGGTG CGGTGGCGGC GCTTGAAGAC GAGGTCCTCG CCGAGGAGCC CGAGCTGCTG
GCCGCACTGG CCGAGCGCGG GGTGCGCGCC GACCGCCGTC CACTGCGCCT GATGCCCCGG
CAGTTGGTCT GGCACTGGCC CGACGCACAG ACCCTCTCTC TCGACTTCAC GCTCACCGCC
GGGGCCTACG CCACCACGGT GATCGCGGAA GTCTTGGAGA CCGCCGCGGA AGAGTGA
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| Protein sequence | MIRAHGGPLG TARLRACPED FRVDEQLPFQ PSGVGEHCLI QVCKRGWTTE AVAKILAARA
GVSRGAVSFA GLKDRHAVTT QWFSVHAPKA CPALLPGCLE DGVEIVAATR NARKLRRGAL
GGNRFRLLVR EVSAPRRAVE RRLHAISRRG VPNYFGPQRF GRGGRNLQQA RAWLLEGEPV
RGRTVRGLLI SAVRSDLFNR VLARRVAAGT WDTLLAGERA ALDGTGSHFP VVAVDAPLRR
RVAQGDVHPS GPLPGVGGDR PEGAVAALED EVLAEEPELL AALAERGVRA DRRPLRLMPR
QLVWHWPDAQ TLSLDFTLTA GAYATTVIAE VLETAAEE
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