| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1282 |
|---|
| Symbol | |
|---|
| ID | 4710570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 1394720 |
|---|
| End bp | 1395961 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639855756 |
|---|
| Product | helix-hairpin-helix DNA-binding motif-containing protein |
|---|
| Protein accession | YP_001002858 |
|---|
| Protein GI | 121998071 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1555] DNA uptake protein and related DNA-binding proteins |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTGT TTAATCTCGG CACGAAGGAC GCTTACGGCA AGCAGCGGCG CGTCGAGCAC
CGCGGCAAGT ACCTGCGGGC CAGTCGCACC GGCGGCGTGG CGCTGCGCGC CCAGGCCCGG
GCGGCGGGCG TGGATCTTAC CGCCAACACC CGGCGCGGCG TCCGGGCTTC GGTAACGCCG
GCGAAGAACA CCCAGGTGGC CCTGCAGAAC GGACGGTTCA TCCTGCGCGG TCGCTACGGG
AAGGGGCCAA CCAAGCTGAA CCTCTCCAAG AGCGGCGCGA CGGTCTCCAC GCGCAATCGG
CTCGGCTCGT TCAACTGGCT CAAGCCCAAC CGCTCCTCGG CGAAGCCCTT CGGCGTCCAG
GTCCGGGGGC AGAAGGCGGC GCAGCTGCAG CTGATCTACA TGGTCGTCGC TGCCATCGTC
GGGGCGGTGC AGCTGCTCTT GATGCTCATT GGCGGGCTGC TGCGCGGCGC CATCGCCCTC
GGCCAGTGGG TCGGTGACAA CGTGCACGCC CTGCCGCGGT GGTGGCGCAA TGCCTGGCTG
CGCCGACAGC GCCGGCGGAT CGACGAGGCT GTCGAGCAGG CGATCAACCG CTGGGACGCG
GACCGGCTCA GCGCCTCCTT CGCCCTGGCG GTGGCCGTCT GGGGGCGGGG TGAGGCGCTG
CAGGACGGCC AGCGGACGTA CCGACGGGTC ACCGAGAAGA CGGGATGGGT CGCGCTCCCG
CGCTCCCCGG AGGTCTTCGC CGAGGCGGCC CAGGGACTTG AACATTGCCG CGCCGCCGTT
CAGCCGAGGG AGGATGCGCA CCGGATCCTG ATCGCGCTGC TCGCCGAAGT GGCGGCCGAG
AAACTGGAGG GGTCCCGGCG GGCGGCACTG CTCTTTGAGG CCGATGACCT GGCCCTGATC
CAGGGCCCAC GGACGGTGCT CCAGGAGCAG ATGCTGGAGA TCTTCGCTGA TCACGCCCAG
CTACAGATCG AGCCGGCCCG GCCGGTGGAT GAGGCCTCGA AGCCATCCTC AGCGCGGTCG
GCTCGTGGTG CACCGGGGGC GGGGCAGGGC GACGAGCCGA CGGGGCGCAT CGACCTCAAC
ACGGCCTCCA TCGAAGAACT CCAGGCGATC CCCCACATCG GCCCGGAGCG CGCCGAGGCG
ATCGTCGCCC TGAGACCGAT CCGGCGGATC GAGCAGCTTG AGGAAGTCGA CGGGATCGGC
ACGAGCCGCC TGGCGGAGAT CGTCGATCAG GTGAAGGTGT GA
|
|---|
| Protein sequence | MALFNLGTKD AYGKQRRVEH RGKYLRASRT GGVALRAQAR AAGVDLTANT RRGVRASVTP
AKNTQVALQN GRFILRGRYG KGPTKLNLSK SGATVSTRNR LGSFNWLKPN RSSAKPFGVQ
VRGQKAAQLQ LIYMVVAAIV GAVQLLLMLI GGLLRGAIAL GQWVGDNVHA LPRWWRNAWL
RRQRRRIDEA VEQAINRWDA DRLSASFALA VAVWGRGEAL QDGQRTYRRV TEKTGWVALP
RSPEVFAEAA QGLEHCRAAV QPREDAHRIL IALLAEVAAE KLEGSRRAAL LFEADDLALI
QGPRTVLQEQ MLEIFADHAQ LQIEPARPVD EASKPSSARS ARGAPGAGQG DEPTGRIDLN
TASIEELQAI PHIGPERAEA IVALRPIRRI EQLEEVDGIG TSRLAEIVDQ VKV
|
|---|
| |