Gene Hhal_1161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1161 
Symbol 
ID4710152 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand+ 
Start bp1268609 
End bp1269133 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content73% 
IMG OID639855634 
Product2'-5' RNA ligase 
Protein accessionYP_001002738 
Protein GI121997951 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.274053 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGAAC GGCAACGGCT ATTCTTCGCC CTCTGGCCAC CGGCGCACCT GCGCGAGCGC 
CTCACCGCGG TGCAGGGCGA ACTCGGACGG ATCGGCCGGC CGGTCGCCGC GGAGCGGCTG 
CACCTGACCG TGGCCTTTCT CGGCAACAGC GATCCGGAGC GGGCCACCGA GGCGGCGGCG 
GCCGCGACCC GCGAGGCCCG CGGCTTTGTG CTCCGGCTCG ACCGTTTCGG CCACTTCGTG 
CGGAGCGGCG TGGTGTGGAT GGCGCCGACG GAGTACCCGA ACGCGCTGGA GACGCTGCAC 
CGCCGGCTAC GCCGCGAGCT GCGGCGCCGG GGACTGCGCA CCGAGCGCCG CTCGCTGCAC 
CCCCACGTAA CCCTCTTTCG CAAGGCGACC CCGAGCGGTC CGCATCCTGC GGCTTCGCTG 
GAGTGGCCGG TGGACGAACT GACGCTCGTG GCTTCCGTCA CGCGTGCGGA AGGGCCGGAG 
TATCACCGCG CCGGTGCCTG GCGGCTGCCC CTCGGCGAAG GCTAG
 
Protein sequence
MTERQRLFFA LWPPAHLRER LTAVQGELGR IGRPVAAERL HLTVAFLGNS DPERATEAAA 
AATREARGFV LRLDRFGHFV RSGVVWMAPT EYPNALETLH RRLRRELRRR GLRTERRSLH 
PHVTLFRKAT PSGPHPAASL EWPVDELTLV ASVTRAEGPE YHRAGAWRLP LGEG