| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0865 |
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| Symbol | rpoB |
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| ID | 4710976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 936689 |
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| End bp | 940834 |
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| Gene Length | 4146 bp |
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| Protein Length | 1381 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639855324 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001002443 |
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| Protein GI | 121997656 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTATT CGTTCACCGA GAAGAAGCGC ATCCGCAAGG ACTTCGGGAA GCTCCCGAAC
ATCCTCGATG TCCCCTACCT GCTGGCGACC CAGGTCGACT CGTACCGGCA ATTCCTGCAG
GACGAGGTCA GCGAAGACGC GCGCGACACC GAGGTAGGCC TCGAGGGCGC GTTCCGGTCG
GTCTTCCCGA TCCAGAGCCA CTCCGGGAAT GCCGAGCTGC AGTACGTCTC GTACCGCATC
GGTGATCCGC CGTTCGAGGT CAAGGAGTGC CAGAGCCGGG GCCTGACCTA CGCCGCGCCG
CTGCGCATGC TGGTGCGCCT GGCGCTGTAC GACAAGGAAG GCGGCGGCGT GAAGGACATC
AAGGAGCAGG AGGTCTACAT GGGGGAGATG CCCCTGATGA CCTCCACCGG GACCTTCGTG
GTCAACGGTA CCGAGCGCGT GATCGTCAAC CAGCTGCACC GCTCGCCGGG TGTCTTCTTC
GACCACGACA AGGGCAAGAG CCACTCCTCC GGCAAGCTGC TCTTCTCGGC GCGGGTGATC
CCGTACCGCG GCTCCTGGCT CGACTTCGAG TTCGATCCCA AGGACACCAT CTACGTGCGC
ATCGACCGGC GCCGCAAGCT GCCGGCGACG ATCCTGCTGC GCGCCCTCGG TTATACCCCC
GAGGAGATCC TCTACGCCTT CTTCGACACC GACCGCTTCC ACCTAGGCAG CGGCAACAAG
GTCGTGCTCG ACCTGGTGCC CGAGCGCCTG CGCGGCGAGA CCGCCAGCTT CGACATCGTC
GCCGGCGGCG AGACCATCGT CGAGGCCGGG CGCCGGGTCA CCGCGCGCCA CGTCAAGCAG
CTGCAGAAGT CGGGCGTCGA GCAGCTCGAG GTGCCCGAGG ACTACCTCAC CGGCAAGATC
ATCGCCCACG ACGTGATCGA CCCGGCTACC GGCGAGATCC TGGCCGAGGC CAACACCACG
CTGACACCGG AGATCACCCA GTCGCTGTTC GACGCCGGCA TCCGCGAGAT CGAAACCCTG
TTCGTCAACG ATCTCGACCG CGGCCCGTAC ATGTCCACCA CCCTGGCCGC CGACGCCACG
CGCAGCCAGA TGGAGGCGCT GGTCGAAATC TACCGCATGA TGCGTCCCGG CGAGCCGCCG
ACCAAGGACG CCGCGGAGAA CCTCTTCCAC ACCCTGTTCT TCACCAGCGA CCGCTACGAC
CTGTCGCCGG TGGGGCGGAT GAAGTTCAAC CTGCGGGTTG GCCGCGACGA GGTGCGGGGT
CCGGGCATCC TCTATGACGG CAAGTACTTC GCCGGCCTGG GCAACGCCGA CAAAGAGGCG
GACGATCTCA TCGAGCAGTA CGGTGAGAGC TCCGACATCC TCGACGTGCT CCGCGAGCTC
ATCGACATCC GCAACGGCAA CGGCCAGGTG GACGACATCG ACCACCTCGG CAACCGTCGC
GTGCGTTCGG TGGGCGAGAT GGCCGAGAAC GTCTTCCGCG TCGGCCTGGT CCGGGTCGAG
CGCGCGGTCA AGGAGCGCCT GTCGCTGGCC GAGAGCGAGG GGCTGATGCC CCAGGAGCTG
ATCAACGCCA AGCCGGTGGC CGCAGCCATC AAGGAGTTCT TCGGCTCCTC GCAGCTGTCG
CAGTTCATGG ACCAGAACAA CCCGCTCTCC GAGGTCACCC ACAAGCGGCG GATCTCGGCG
CTGGGTCCGG GCGGCCTGAC CCGCGAGCGG GCCGGCTTCG AGGTCCGCGA CGTGCACCCG
ACCCACTACG GCCGGGTCTG CCCGATCGAG ACGCCGGAGG GGCCGAATAT CGGCCTGATC
AACTCCCTGG CCGTCTACGC CCGGGCCAAC CGCTACGGCT TTCTGGAGAC CGCCTACCGC
AAGGTGGTCG ACGGCCAGGT CACCGACCAG GTCGAGTACC TGTCGGCGAT CGAGGAGTCG
CGTTATGTCA TCGCTCAGGC CAACGCCCGG GTCGATGAGA GCGGCTACCT GGCCGACGAC
CTGATCTCCT GCCGGCACCA GAACGAGTTC ACTATGGCGA CGGCGGACCG CGTCCAGTAC
ATGGACGTCT CGCCGCGGCA GATCGTCTCG GTGGCCGCCT CGCTGGTGCC GTTCCTCGAG
CACGACGACG CCAACCGCGC CCTGATGGGG GCGAACATGC AGCGCCAGGC GGTGCCGACG
CTGCGCGCCG ACAAGCCCCT GGTGGGCACC GGCATGGAGC GCACCGTGGC CCGCGACTCC
GGCGTCATCG TCACCGCCGA GCGTGGCGGC GTGGTCGAGC AAGTCGACTC GGGCCGGATC
GTCGTGCGGG TGGATGATGA AGAGACCACC CCGGGCGAGC CGGGCGTCGA CATCTACAGC
CTGACCAAGT ACACCCGCTC CAACCAGAAC ACCTGCTTCA GCCAGAAGCC GCTGGTGCAT
GTCGGGGACC GCGTGGCCCG GGGCGACGCC CTGGCCGACG GGCCGTCGAC GGACATGGGC
GAGCTGGCCC TGGGCCAGAA CATGCTGGTC GCTTTCATGC CGTGGAACGG CTACAACTTC
GAGGACTCGA TCCTCATCTC CGAGAAGCTG GTCAAGGAGG ATCGCTACAC CTCCGTCCAC
ATCGAGGAGC TGACCTGCGT CGCCCGGGAC ACCAAGCTCG GCAGCGAGGA GATCACCTCG
GACATCCCCA ACGTCTCCGA GTCGGCGCTC TCCCGCCTCG ACGAGTCGGG CATCGTCTAC
ATCGGTGCCG AGGTCAAGGC CGGTGACATC CTCGTCGGCA AGGTCACGCC CAAGGGCGAG
ACCCAGCTCA CGCCGGAGGA GAAGCTGCTG CGGGCGATCT TCGGCGAGAA GGCGTCCGAC
GTGAAGGACA CCTCGCTGCG GGTGCCCACC GGCATGGACG GTACCGTCAT CGACGTCCAG
GTCTTCACCC GCGACGGCGT CGAGAAGGAC GAGCGGGCCC GCGCCATCGA GCGCGAGGAG
ATCGCCCGGG TGCGCAAGGA CCTGGACGAC GAGGCACGCA TCTTCGAGGA CGACGCCTAC
GCCCGCCTCG AGAAGCTGCT CGTCGGCAAG GTCGCCGAGG GTGGTCCCAA GGGGCTCGGC
AGCGGTGCCG AGGTCACCGA GGCGTACCTG CAGGACCTGC CGCGGGAGCG CTGGTTCGAG
ATCCGCATGC GCGACGAGGC GGTCAACCAG CAGCTCGAGG CGGTGCGCCA CCAGCTCGAG
ACCCAGCGGG ACCGCTTCGA GCGGCGCTTC CAGGAGAAGA AGGAGAAGAT CACCGCCGGT
GACGACCTCT CCCCGGGCGT GCTCAAGACC GTCAAGGTCC ACCTGGCCGT CAAGCGCCGC
CTGCAGCCGG GCGACAAGTT CGCCGGCCGC CACGGCAACA AGGGCGTGAT CTCCATGATC
GTCCCCGAGG AGGACATGCC CTACATGGAC GACGGCACTC CGGTGGAGGT GGTTCTCTCG
CCGCTCGGCG TGCCGTCGCG GATGAACGTC GGCCAGGTGC TCGAGACGCA CCTCGGCTGG
GCGGCGCGTG GGCTGGGCCA CCAGATCGGG CAGATGCTTG AGCAGCAGGC CGACGCCGAA
GCCCTGCGCG GCTATCTCTC CGAGATCTAC GACGCCTCGG GGCGCAAGGA GGAGCTCGAG
ACCCTCAGCG AGGAGGAACT CCAGGAGCTC TGCCACAATC TCAAAGGTGG GGTGCCTGCG
GCGACGCCGG TCTTCGACGG CGCCAACGAG GGCGAGATCA AGCGCTGGCT GAAACTCGCC
GGGCTGCCCG AGTCGGGGCA GACCACGCTC TACGACGGGC GGACCGGCGA CGCCTTCGAC
CGGCCGATCA CGGTGGGCTA TATGTACATG CTCAAGCTCA ACCACCTGGT CGACGACAAG
GTCCACGCCC GCGCCACCGG CCCGTACTCG CTGGTGACCC AGCAGCCGCT GGGCGGCAAG
GCGCAGTTCG GTGGTCAGCG CTTCGGCGAG ATGGAGGTCT GGGCGCTGGA GGCGTACGGT
GCGGCGTACA CGCTGCAGGA GATGCTCACC GTCAAGTCCG ACGACGTCAG CGGCCGGACC
AAGATGTACA AGAACATCGT CGACGGGGAC CACCGCATGG AGGCCGGTAT GCCGGAGTCG
TTCAACGTCC TGGTCAAGGA GATCCGTTCC CTGGGCATCA ACATCGAACT GGAGAGGGAC
GACTGA
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| Protein sequence | MAYSFTEKKR IRKDFGKLPN ILDVPYLLAT QVDSYRQFLQ DEVSEDARDT EVGLEGAFRS
VFPIQSHSGN AELQYVSYRI GDPPFEVKEC QSRGLTYAAP LRMLVRLALY DKEGGGVKDI
KEQEVYMGEM PLMTSTGTFV VNGTERVIVN QLHRSPGVFF DHDKGKSHSS GKLLFSARVI
PYRGSWLDFE FDPKDTIYVR IDRRRKLPAT ILLRALGYTP EEILYAFFDT DRFHLGSGNK
VVLDLVPERL RGETASFDIV AGGETIVEAG RRVTARHVKQ LQKSGVEQLE VPEDYLTGKI
IAHDVIDPAT GEILAEANTT LTPEITQSLF DAGIREIETL FVNDLDRGPY MSTTLAADAT
RSQMEALVEI YRMMRPGEPP TKDAAENLFH TLFFTSDRYD LSPVGRMKFN LRVGRDEVRG
PGILYDGKYF AGLGNADKEA DDLIEQYGES SDILDVLREL IDIRNGNGQV DDIDHLGNRR
VRSVGEMAEN VFRVGLVRVE RAVKERLSLA ESEGLMPQEL INAKPVAAAI KEFFGSSQLS
QFMDQNNPLS EVTHKRRISA LGPGGLTRER AGFEVRDVHP THYGRVCPIE TPEGPNIGLI
NSLAVYARAN RYGFLETAYR KVVDGQVTDQ VEYLSAIEES RYVIAQANAR VDESGYLADD
LISCRHQNEF TMATADRVQY MDVSPRQIVS VAASLVPFLE HDDANRALMG ANMQRQAVPT
LRADKPLVGT GMERTVARDS GVIVTAERGG VVEQVDSGRI VVRVDDEETT PGEPGVDIYS
LTKYTRSNQN TCFSQKPLVH VGDRVARGDA LADGPSTDMG ELALGQNMLV AFMPWNGYNF
EDSILISEKL VKEDRYTSVH IEELTCVARD TKLGSEEITS DIPNVSESAL SRLDESGIVY
IGAEVKAGDI LVGKVTPKGE TQLTPEEKLL RAIFGEKASD VKDTSLRVPT GMDGTVIDVQ
VFTRDGVEKD ERARAIEREE IARVRKDLDD EARIFEDDAY ARLEKLLVGK VAEGGPKGLG
SGAEVTEAYL QDLPRERWFE IRMRDEAVNQ QLEAVRHQLE TQRDRFERRF QEKKEKITAG
DDLSPGVLKT VKVHLAVKRR LQPGDKFAGR HGNKGVISMI VPEEDMPYMD DGTPVEVVLS
PLGVPSRMNV GQVLETHLGW AARGLGHQIG QMLEQQADAE ALRGYLSEIY DASGRKEELE
TLSEEELQEL CHNLKGGVPA ATPVFDGANE GEIKRWLKLA GLPESGQTTL YDGRTGDAFD
RPITVGYMYM LKLNHLVDDK VHARATGPYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG
AAYTLQEMLT VKSDDVSGRT KMYKNIVDGD HRMEAGMPES FNVLVKEIRS LGINIELERD
D
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