| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0551 |
|---|
| Symbol | |
|---|
| ID | 4710274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 622359 |
|---|
| End bp | 624560 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639855009 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001002139 |
|---|
| Protein GI | 121997352 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.629102 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACC GGGTTCGGCG CATTGCGACC CCCTGGCGTG GCGTGTTGCC GGTGGCCGGA
ATCGCCGGAC TGGCGGCGCC GGCCACGGTC CTGGGCGACT CGGGGGTCGA GGTCCTGCCG
CAGGTGACGG TCACCGGGGA TCCGCTCGGC AGCCGCACCG AAGGCGAGCT GGTCCGGCCG
ATCTCGGTGG TGGAGGGCGA GGCGCTGGAG CGCCGTCGCG ACGGGGGGAC CATCGGTGAG
GTCCTCGACG GCCTGCCGGG GATCAGCAAT GCCGACTTCG GTCCCGGCGT GGGGCGGCCG
ACCATCCGCG GCCTGCAGGG CTCCCGGGTG GAGGAGCTGC AGGACGGCAT GCGGATCAGC
GATGTCTCGG ACGAGGGCGT CGATCACGCC GTCGGCGGCG ACACCCGGCG GGCGCAGTCG
GTGGAGCTGA TCCGCGGCCC GGCGACCCTG ATGTACGGCT CCGGTGCCGC CGGCGGCGCG
GTGAATATCG TCACCAACCG GTTCGACCCG TTCATTGAGG AGCAGGTCTC CGGCAGCCTC
TACGGTGCCT ACACGGACAA CGCCAACCAG CGCCAGGGCT ATGCCGGGGT GGAAGTCCCC
CTGACCGAGG GCTTCGCCCT GCGCACCGAC TACAGCCTGC GCCGCAGCGA CGACGCCGAC
ATCTCCGGCT TCCAGCTCGA GGACGGCCGC GAGGGCGATC ACTTGATCCG CGACACGCTG
GTCAACAGCG ACGTGGAGGA CGACAGCTGG TCGCTGACCG GCATGTGGTC CGAGGAGTGG
GGCTACATCG GCATCGGCTA CGACCGCTGG GAGATCGAGT ACGGCGTCCC CGAGCCCTTC
TTCCCGGTGC ATACGGACGA TATCAATCTC TCCGACGAGT ACGAGCGGAT CTACGCCGAG
CACGACCGCT TCGACCTGCG CAGCGAGTTC TACGATCCGT TCAACGGCTT CTCGGCGGCC
CGGTTCAACC TCTCCTACAC CGAGTTCGTC CAGGACGAGG TCGAGTACGA CTACGATACG
GACACCGGGC GGCTGGACGA GCGGGAGACC GAGGCCGCCT TCGAGCAGGA CGAGCTGGAC
GCCCGGCTGG AGCTGACCCA CGATCCCCTG GACGCCCTCG GCGGGCTGCG CGGGACCCTC
GGCATCGACT TCCACGACGT GGACTACGTC GGCGCCGATC CCCGCGAGGA CAGTGACGAC
CTCATCCGGC CCAACGAGAC CACCTCCACC GGGGTCTTCC TGGTCGAGGA GCTGCCCACC
GGCTTCGGCG CCGTGGAGTT CGGCGCCCGG CTGAACCACG AGCGGTCACG GCCGGCGGAT
GTTTATGACC CGGTGATTGA CTCGGTTGGA GATGGCCTGA CTGATGTTCC CACTCGGACC
TTCGAAGAGG AGTTGGGCAG CCGCACCTTC ACCACCGGCA GCGCCTCCGC CGGCGCCCGC
TTCGACCTGG ACGATCGGCA CCGCCTGCGC AGTTCCGTCA CCTACGCCGA GCGGGCCCCC
TCCGCCGAGC AGCTCTACGC CTTCGGCCGC CACGGCGCCG CCGGTACCTG GGAGGTGGGC
AACCCGGACC TCGACGAGGA GCAGTATCTC AACCTGGATA TCGCCTTGGA GCGCCACCAG
GGCGAGGTCC GCTACGACGC CGCGCTCTTC TACAACCGGG TGGACGACTA CATCTACTTC
CGGAGCTTCG ACGACAACGG CGAGCCGCTG CGCGTTGACA GGGACGCAAC TTACGATGCC
GAAGGCGATC AGCTGGTCTA CAACACCGCC GACGACGTCC ACCTCTACGG CCTGGAGTTC
GAGGCCGAGC GCGATCTCAC GGTGGCGGAC TGGCCGCTAA CCGCCCGGGC CAGCGGCGAC
TACCTGCGCG GGCGGTTCCG GGATGGCGGG AGCCTGCCGC GGATGACGGC GCCGCGTCTG
GGGATCGGCG TGGACACCGC CTGGCGGACC CTGGACTTCT CGGTGGACTG GCGCCACGTC
TTCCGGCAGA CCGACACCGG CCCAGCGGAG ACCGAGACCG GCAGCTACAA CCTGTTGGGC
TTCGATATCG GCTGGGACCC CCAGGAGGTC GAAGACCTGC GTGTCTTCGT CCGCGGCCGC
AACCTCCTCG ACGAGGGAGG CCGGCGGCAT GAGAGCTTCT TCAAGGACCG GGCGCCGATC
CTCGGCCGCT CGTTCACCGC CGGGGCCCGC TACAATTTCT AG
|
|---|
| Protein sequence | MKHRVRRIAT PWRGVLPVAG IAGLAAPATV LGDSGVEVLP QVTVTGDPLG SRTEGELVRP
ISVVEGEALE RRRDGGTIGE VLDGLPGISN ADFGPGVGRP TIRGLQGSRV EELQDGMRIS
DVSDEGVDHA VGGDTRRAQS VELIRGPATL MYGSGAAGGA VNIVTNRFDP FIEEQVSGSL
YGAYTDNANQ RQGYAGVEVP LTEGFALRTD YSLRRSDDAD ISGFQLEDGR EGDHLIRDTL
VNSDVEDDSW SLTGMWSEEW GYIGIGYDRW EIEYGVPEPF FPVHTDDINL SDEYERIYAE
HDRFDLRSEF YDPFNGFSAA RFNLSYTEFV QDEVEYDYDT DTGRLDERET EAAFEQDELD
ARLELTHDPL DALGGLRGTL GIDFHDVDYV GADPREDSDD LIRPNETTST GVFLVEELPT
GFGAVEFGAR LNHERSRPAD VYDPVIDSVG DGLTDVPTRT FEEELGSRTF TTGSASAGAR
FDLDDRHRLR SSVTYAERAP SAEQLYAFGR HGAAGTWEVG NPDLDEEQYL NLDIALERHQ
GEVRYDAALF YNRVDDYIYF RSFDDNGEPL RVDRDATYDA EGDQLVYNTA DDVHLYGLEF
EAERDLTVAD WPLTARASGD YLRGRFRDGG SLPRMTAPRL GIGVDTAWRT LDFSVDWRHV
FRQTDTGPAE TETGSYNLLG FDIGWDPQEV EDLRVFVRGR NLLDEGGRRH ESFFKDRAPI
LGRSFTAGAR YNF
|
|---|
| |