| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0363 |
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| Symbol | |
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| ID | 4711207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 423733 |
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| End bp | 425766 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639854826 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001001959 |
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| Protein GI | 121997172 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.327078 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCGA AGGGTTTGCC CCGGGTCCTT TGGGAAGACT TTCTGGATCG ATCCCGCATC
GGCCTGTTCC TGGTGGACGC CCACCAGCGG TTACAACCGG TCAACCCCGC CGCGCGGGAT
CTCCTCGGCC GATCCGGGTC GGCCGAGCCG ATCCCTCCGG AACAACTGCC CTGGCGGTTC
GAGGCGAACG AGAAAGAGCC GGTTCCCCGG TGGCCGTGGG AGCGTCTGGT TGACCGTGCC
GCCCCGCAGC CTGTGGTCGA AGAGACCCTG AATGTTCGTG ATCCGTGGCA GCGCCCCCGC
ACTTTGCACT GTCATGGGGT TGCGCGGGAT GGCATCGATG AGGCGGGCCC GAAGGCGCTG
CTGGCCATCG AGGATTGGAC CGCTGTCCGG GCCGCAGAAG AGGAGCGCGG CTTTCTGCTC
GAACTCCTTG ACGCATTGCC CGACTATATC GGCATCGCTG ACACCCGAGG CGGCATGCTC
TACCACAACC GGGCCCTCTA CGAGGCGCAG GGGCAGGGCG GATCTGGCTC GTTCCTGGAA
CGGCTCGCCG GCGCGCATGA TCCCGAGAGC TTTCAACGCC TCCAGAACGA AGCGGTCCCG
AACGCCGAGC AAACGGGTAT CTGGCGCGGC GAGACCCGCC TGCACCACCG GGGGATGGAG
GCGGAAGTGC CGGTGGAGCA GTTCCTGATT GCGCACCGCG ATGAGCACGG GGCCGTGGTG
CGCTACTCCA CATTGATGCG GGATCTCTCG CAGCGCTATC ACCACGAATC CGAGATCGAG
CGGCTGCTCT ACCGGGATCC GATCACCGGA TTGCCGAATC GGATGCTCTT CCACGACCGG
ATCGAACAGG CCCACGCTCT GCAGGAGGGT AGCGCCGATT GGCTCGCGGT GATCGTCTGC
GATATCAAGG AGTTTTCCGC CATCAATGAA AGCCTTGGCC AGGATCTTGG AGATGAGATC
CTCGCAGCGG TGGGCCGTAA GCTGCGTGAA CTGTTGCCCC AGGCGGCCAC CATCGGGCGC
ATGGGCGGAG ATCAGTTTGG GGTATTGCTG CCTTGGCTGG CGGACGCGCA GGAGGCCATG
GGGTATGCCG AGCGCATCGT CGACAAAGTC GGCAATCCTC TGGCGTTGTC GGATCGGTCG
ATCCACCTCA GCTTGCGAGC GGGAATCAGT GTGACCCGCC ACAGCGGCGA GTCGGCGGGG
GTGTTGGTGG AGCAGGCGGA TGCCGCGCGG CAGCAATCGA AGCGGACCGC CTCGCGCTGC
CAGTTTTTCA GTCGTGAACT GACGGAGCAG GCTCGCGAGC AGGTCTATCT GACCACAGAA
CTCCGCCGGG CCCTGGATAG CGGCGGGCTG GCGGTGCACT ACCAGCCCCA GGTCGATCTG
CGCAGTGGGG AGTGGCTGGG TTATGAGGCG TTGGTGCGTT GGCACCACCC GAAGGACGGC
TGGATCTCAC CAGGACGGTT CATCCCGGCC GCCGAGCGGG CCGGGATGAT CCACCACGTG
GGTGAGCAAG TGCTGGAACA GGCCGGCCGG CAGTTCCGGC AGTGGCGGGA CGAGGGCGTG
GCCCCGGAGT GGCTGGCCGT CAATATCGCC GCGCCGCAGA TGGAGACGCC GGGCTGGGGG
GAGCAGCTGC TGGCGTTCCT GAACCGCTTC GGCTTGGCCC CTGAAGATCT GGAGCTCGAG
ATCACCGAGC GTCTGCTGGT CGAGAGGCGC ACCGAAGTGG CCACCGAGTT GGCTTATCTG
CGTCGGCACG GCGTGCGCGT GGCGGTGGAC GATTTCGGCA CCGGGTACTC GTCGCTCAAC
TACCTGACCG AGCTCCCGGT GGACCGGATC AAGATCGACC GGGCGTTCAT CGCCGACCTG
ACCGAGGACC CCCGGAAGGT GGCGGTGGTC GAGGCCATCG TGACCCTGGG CCAGAGGCTG
GGTATCGCGG TGCTGGCCGA AGGGGTCGAG ACGGAGGCGC AGCGCCAGGT CCTGCTCGAT
GTCGGCTGTC GCCAGGGTCA GGGGTTTCTC TTTGCCCGGC CGGCGCCGGC CTAG
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| Protein sequence | MAAKGLPRVL WEDFLDRSRI GLFLVDAHQR LQPVNPAARD LLGRSGSAEP IPPEQLPWRF
EANEKEPVPR WPWERLVDRA APQPVVEETL NVRDPWQRPR TLHCHGVARD GIDEAGPKAL
LAIEDWTAVR AAEEERGFLL ELLDALPDYI GIADTRGGML YHNRALYEAQ GQGGSGSFLE
RLAGAHDPES FQRLQNEAVP NAEQTGIWRG ETRLHHRGME AEVPVEQFLI AHRDEHGAVV
RYSTLMRDLS QRYHHESEIE RLLYRDPITG LPNRMLFHDR IEQAHALQEG SADWLAVIVC
DIKEFSAINE SLGQDLGDEI LAAVGRKLRE LLPQAATIGR MGGDQFGVLL PWLADAQEAM
GYAERIVDKV GNPLALSDRS IHLSLRAGIS VTRHSGESAG VLVEQADAAR QQSKRTASRC
QFFSRELTEQ AREQVYLTTE LRRALDSGGL AVHYQPQVDL RSGEWLGYEA LVRWHHPKDG
WISPGRFIPA AERAGMIHHV GEQVLEQAGR QFRQWRDEGV APEWLAVNIA APQMETPGWG
EQLLAFLNRF GLAPEDLELE ITERLLVERR TEVATELAYL RRHGVRVAVD DFGTGYSSLN
YLTELPVDRI KIDRAFIADL TEDPRKVAVV EAIVTLGQRL GIAVLAEGVE TEAQRQVLLD
VGCRQGQGFL FARPAPA
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