| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0163 |
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| Symbol | |
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| ID | 4710815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 189780 |
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| End bp | 193223 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639854621 |
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| Product | hypothetical protein |
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| Protein accession | YP_001001759 |
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| Protein GI | 121996972 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.137975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGGGC AGGCGTCCAT CAGTCAGGGG GCGGTCGGGT GGCTGCGGAT GCCCGCCTTC
CTGCGGCGAC CGTTTGTGTG GCTGCTGGTG GCCGTCCTGC TCGCCGCAGT GGCTGTCTGG
TTCGGCCTGC CGTTGTTTGG CGTCGATCCG GCCGGGTGGC GTCTGGCAGG CGTCCTGACC
CTGTTCGGGG TGGCTGGTCT GGCGGTCGGG GCTGTTGCGC TGCGGCGCGC CCGACGGCTG
GATCGGCAGC AAATATCTGG GGACGAGGCC GAGGCCCTGG CCGCGGCCAT GGATCGCCCC
CTGCGTCGGC TGGACCGCCC CTCGGGGCCA ACGGTGCCGG GGACTGGTGG GCGATACCGT
GTGCCTTGGT ACTTGGTCAT CGGGCCCGCC CGGTCGGGTA AGAGCCGCCT GATCCGCTGC
AGCGGTCTTC ACTTCCCCGA CGACGATGAT GAGTGGCTGG CTGCACGCGG TGACGGCGGC
ACCCGCCATT GCGACTGGTG GCTTTCCGAT CGGGCCGTTT TCCTCGATAC AGCTGGGCGC
TACACCACCG ATCCCCCCGC GGAGACCGGC TGGTATCAAC TCCTCGGTCT GCTCCGGCGT
GTTCGCCGGC GTCGCCCCGT CGATGGGGTG CTGGTCACCA TCGACGCCGG CGAGCTGGCC
GAACTGGATG CATCGGGACT GAGGCGATGG GCGCGGGCCC TGCGGACGCG CCTCGCGGAG
CTCGAGACCG ATCTCGGGGT GCGGCCGCCG GTGCTCCTGA TCGTGACTGG AGTGGACTGT
CTCCCCGGCT ACGAGGCGTT CGTGGCGGCA GCCGGGGGCG GTTCGTGGTG CGGGCCCTGG
GGGGCAGCGG TGGAGTCGGC CGCTGACCCC GGCCTGGCGG CGCAGCGGCT GCAGGCGCAG
GCCGATGAGG CGCGCCTGGG CCTGATGGCG GCTTGGGCCG GGGAGACCGA TGCGGTTGGT
CCGTTCGCCT TTGCCGCCGA TCTGCGTTCG GTGACCGGCC CTTTGGCGGA GCTGCTGCGC
CTGCTGTTGC GCCATGACCC TTATCGGCGC TCGCCGTCCC TGCAAGCGGT GTACCTGACT
GGCCATGCAC CCGGACGACC GAGCCTGACA CCGGGGCTCT TCACCCAGGC TGTCGTCCCG
CTGGCACGGG GGCTGCGCCT CTCCGCCCGG CGGCTGGCGG TTCGGCGGCT GGCCCGGGTC
GCGCTGGTCG CCGGGCTCCT CGGTGTCGCT GGCGTGCTCG GGCACGGTAC CGCCGAGCAG
TACCAGAGCC GTCTCGCCCA GGCCACGGCG GTGGCCGAGG GGGCCGCCGC CGTGGCCTAT
GCGGTGGGCA CCGAGGATCC GGAGGTCGGC GCCAAGCTGG AAGCGGTCGA GCGGGTCCAG
GGGCTGAAGG ATGGGCTCCG ACAGCGCTCT GAAACCGGCG GCATGGCGGC GTTCGCGCTG
GACCCGGGCG GCCGGCGGGT CGGCGAGCTG TACGCGCAGC TGCGGGGGCT TCTGATTGAA
CTCGCCGGCC AGGCCCTGTT GCCGGATGCG GGGCGGGCCG TGCAGCAGCG GCTCGAGGTA
TTCGCCGACG AGTGGCCGGG ACTCGAACCG CCGGAGCGCC AGGCCCGCCG AGAGGCGTAT
CGGGAGGCCC TGGGGGCTTG GCTCCGGCTC ACCGGTGAGG ATGTGCCGGT CGACGATGAT
CGGGTGGCCG TCCTGCTGGC CCGGCTCGTC GCCGCTGAGC AGGGTCTGGG TACACCGGAG
GCGGAGAGCC CGTTGGTCCG CGGCCTGTCC CGCGCGCTGT CGGACCCGCA GCAACGGCGC
TCCGTGGGGG AACGACTCGA CGGGTCACCC GGGCGTCGTC TGGTTGAACG GGCCCGGGAG
CAGCTGCGAA CCCCCGCCCG GCCGGAGCCG ATCCTGGAGC GGCTGCTCGC CGAGGCCGAG
CTGGACTTGG CGCCGTTAAC CCTCGAGGCG ATCGCCCCGG GCGGTGCCTC GCGCATCTGG
TCGAGCCAGC GGCCGGTATC CGGGGCGTTC CGGGGTGCCG CCTGGGAGAC CCGTCTCCGG
CCGGCGCTGG AGCGAACCCT GGAGGGCCTG CGGCACCCGG ATCCCGTCCT CGGCCGCAGC
CGGCGGGACG TGCTCGGGGA CCAGCGGTCC TCGGCCTTGG CCAAGGACGT CGAGGCGCGT
TACCTGCGCG CCTTCGTGGA CCACTGGCTG GATTGGTTGG AAGGGGTGCG CTGGCAATCG
GTGGGCGGCG GGCGCGAACA GGCCGCACAG CTGGAAGAGG CCGCGGATGC CGGTGCCCTG
GCGGCGCTGC TCGAGGGGGT ACACGCCCAA CTGGCGGCAC ACGCCGGCGA CGTTCCGGTG
GCGGCCCTGG GGCAGCAGCT GGGCCAGGAT CTCGGTCGGT ACCGACACGA TCCGAGGGGA
CGGGAGCTCT TCGCCCTGCT GGGGTCGGGA GAAGAAGAAG GCGACGCGGG ACCGCTGCCC
GAGGTCGAGG CGGCCCTCTC CCGGGTGGCG GAGCAGATCG GCCAGCAGGC GTCCGCCGCC
GACCCGGGGC GCAAGGCCAT GGAGCGGGTC GCGCTCGCCC TGGCGGGCGA GGGGAGTGGC
TGTTCGCTGC GCGCGTACCG GACCACAGTC CGGCAAGCGT TGGGCCCGAC CTCCAGCGCC
GTACGCAGCG CGCTGGAACC GGTGCTCCTC GGCGGTATGG ATGCCGCCTG GGCGCGGTTG
CGGGCCGAGG CCGCCGAGGA GCTCGAGGGG CGCTGGCAGG CCGAGGTGGT GGAGCCGTTT
CGTCGCTACC TGGCCGGGCG GTTTCCGCTG GATGCCGACG GTGCGGACGC CGCCCTGGGG
GACTTCGAGG CCTTCTTTGC ACCCGAGTAC GGGGTGTTGT GGCAATTCAA GACCGAACAG
CTTAGTCCGT TCCTGAGCGG CAGCGACGGC CAGGGCGGTG AGCGGCGCTG GCGGGGCGGT
GGGGTGGGCA TCACCGCCGA GGTGGTGGGG GCCCTGGGCG TGGCGGCCCG AATTCGCGAC
GGGCTGTTCG AGGACTCGGG GCAGCTGCAA CTGCGCTATC GGGTGTCGCC GGTCGCCAGC
GCCGACTGGG TCGACATGCG CTGGGAGTCC GACGGCGAGG CGCTGCGCTA CCGCAACGGC
CCGCCGGTCT CTGCGAGCCT ACGCTGGCCC CAAGGGTCCC CCGAGCCCGG CCGAATCGCC
GCTGTCTCTG CCCACAACGG CGCGATGGGG CGGGTCGAGG CGGAGGGCCC CTGGGCGCTG
TTCCGGCTGC TCAGCCGTGC CGAGGAGCGC GAACAGGTCC GTTCCAGTGC GGTCCGCGTG
CGCTGGTCGT TGCATGAAGC GCAGGAGGCG TCGCATCAGC CGGTGGAGTT CCTCCTGCGC
ACCGAACAGA GCACCCCACT GCTGCAGTGG GGGGATCTGT CCCGCTTCCG TCTGCCGACC
CGTTTGACCC AGGAGGAGGC GTGA
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| Protein sequence | MRGQASISQG AVGWLRMPAF LRRPFVWLLV AVLLAAVAVW FGLPLFGVDP AGWRLAGVLT
LFGVAGLAVG AVALRRARRL DRQQISGDEA EALAAAMDRP LRRLDRPSGP TVPGTGGRYR
VPWYLVIGPA RSGKSRLIRC SGLHFPDDDD EWLAARGDGG TRHCDWWLSD RAVFLDTAGR
YTTDPPAETG WYQLLGLLRR VRRRRPVDGV LVTIDAGELA ELDASGLRRW ARALRTRLAE
LETDLGVRPP VLLIVTGVDC LPGYEAFVAA AGGGSWCGPW GAAVESAADP GLAAQRLQAQ
ADEARLGLMA AWAGETDAVG PFAFAADLRS VTGPLAELLR LLLRHDPYRR SPSLQAVYLT
GHAPGRPSLT PGLFTQAVVP LARGLRLSAR RLAVRRLARV ALVAGLLGVA GVLGHGTAEQ
YQSRLAQATA VAEGAAAVAY AVGTEDPEVG AKLEAVERVQ GLKDGLRQRS ETGGMAAFAL
DPGGRRVGEL YAQLRGLLIE LAGQALLPDA GRAVQQRLEV FADEWPGLEP PERQARREAY
REALGAWLRL TGEDVPVDDD RVAVLLARLV AAEQGLGTPE AESPLVRGLS RALSDPQQRR
SVGERLDGSP GRRLVERARE QLRTPARPEP ILERLLAEAE LDLAPLTLEA IAPGGASRIW
SSQRPVSGAF RGAAWETRLR PALERTLEGL RHPDPVLGRS RRDVLGDQRS SALAKDVEAR
YLRAFVDHWL DWLEGVRWQS VGGGREQAAQ LEEAADAGAL AALLEGVHAQ LAAHAGDVPV
AALGQQLGQD LGRYRHDPRG RELFALLGSG EEEGDAGPLP EVEAALSRVA EQIGQQASAA
DPGRKAMERV ALALAGEGSG CSLRAYRTTV RQALGPTSSA VRSALEPVLL GGMDAAWARL
RAEAAEELEG RWQAEVVEPF RRYLAGRFPL DADGADAALG DFEAFFAPEY GVLWQFKTEQ
LSPFLSGSDG QGGERRWRGG GVGITAEVVG ALGVAARIRD GLFEDSGQLQ LRYRVSPVAS
ADWVDMRWES DGEALRYRNG PPVSASLRWP QGSPEPGRIA AVSAHNGAMG RVEAEGPWAL
FRLLSRAEER EQVRSSAVRV RWSLHEAQEA SHQPVEFLLR TEQSTPLLQW GDLSRFRLPT
RLTQEEA
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