| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4222 |
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| Symbol | |
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| ID | 5736076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 5378563 |
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| End bp | 5383836 |
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| Gene Length | 5274 bp |
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| Protein Length | 1757 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641281377 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001546982 |
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| Protein GI | 159900735 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.236113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCTCA CCACGATCCA AGCACTCTAC GATGAAGCAC GGTCTGCTCT CGAAACAGGG
AAGGAGGAGC GTGCCATTGG TGCGAGTGAG CATCTGCTTG AATCGTTTCC CTATTATCTT
GAAGCGTACC GTATCCTCGG CGAATCGTAT CTTAACCGCC AAGATTTAGC CAAAGCCGTC
GAAGCCTTTG AACGGGTCTT ACGTTCTGAC CCCGAAAATA TCCCTGTCCA TGTGGGCTTG
GGGGTAACTT ACGAGCGTCA AGGTAACCTC GCAGCGGCGA TCCGCGAGTT TGAGCAAGCA
TTTGAAATTA AGCCCGATTT GCCTGAGTTG CGCTCGCAAG TGTTGCGTTT GTATACCGAG
GCTTGGGGTA GCGAAAACGC CCGAATCTTG CTGAAAAAGG CAGGTCTCGG GCGTATGTAT
GTGCGCGGAC GACGCTTCGA TAAGGCGATT CAGGAATTTA ACGATGTGCT CGCCGATGAC
CCCAAACGGG TGGATATTGC GGTTGCGCTG GCTGAAGCAC TCTGGCGTAA CGGCCAAGAG
GCTGAAGCCG CCGAAGTTGC CAGCGATATT CTGCGCGATT ACCCCGATAT GCTCAAGGCT
AACTTGATTT TGGGCTATCA TTTGTTGGCC GCTGGCGACC CCAAAGGCCG CAAGTTGTGG
CAACATGCCC AGCAACTCGA CCCCAGTCAA GGCGTGGCCT ATGCCTTATT CGATGGCATG
CTGCCACCAG TCGAAGCCCC CGATACCAAA ATCGAGGCCT TCGATGAAGC CGCTTGGAAA
GCCAAAAAAG CTGAAAAGGC CGAAAAAGAG CGGCTTGCCC GCGAAGCTGC CGAACAAGCC
GAGCGCGATC GCTTGGCCGC CGAGCAAGCG AGCAAAGCGC CAGCCGCCTC TTGGTTGGCC
GAAGTTGAGG CTGCCCCGGT TGCAGTCGGG GTTGCGGCTA ACGCCGATGA TGATTTCTTG
CGTAGCTTGT TGTTTGGCGA TTTTGGGGCA GCTCCTGCTA GTCCTGCACC CACAGCGGTT
GCAATCGCCG AGCCAGAATA CGATGTCGAT TTCAATCTCG ACGACTTGGG CTTAGATCTT
CAGCCCTTCT CGCTCGATGA AGTTGATGAC ACCCCCAGCA ATAAAGCGCC AACGCCTGCG
CCCGAGCCTG TGGTTGCTCC AACCAAGCCT GCTCCTGAGC CAGTAGTTGC CAGCAATGAT
GATTTTGAGT TGCCGGGCGA TCTAACGCCC TTCAGTTTTG GCGATTGGGA TGAAAGCAGC
ATCGATGATA TTCCGGGCAC TGGCGCGGAT ACTGGCAAGT TGCCTGAGCA ATTGCAGCCA
TTCTCCTTGG AAAATTTTGA TGATGTACAA CCTGAAACCA GCTCGAAAGC CCAAGATGAT
GATTTGGCTT TACCAAATAC CTTAAAGCCA TTCTCACTTG ATGAACTGAG CTTTGATTCA
ATCGACACAC CATCAGAGCC AAGCATGCCC TTCAGCCGCG ATTTACCCAG CTTCCCCGAT
ACCGATCAAG AATCAGGTGG TTTTAGCTGG CAACAACCAC GTTCACGTTC GCGCTCGATT
TTTGGGGCAC AACCTGAACC AGAGTTCAAC CAAGATGAAG AAGATGATGC TGGAATTTTC
AACCGCATGG TGATCAAGAA GCAGACGCAA ACCCTGCCAC CATTGGTTGA GCCAGTCTAT
GATCCTGCCG ATTCTGACGA TGAGGCAATG AATTTCTTCT CGAATGATGA TGTTGATTTG
CGTAATTACG ATGAGCATGA TCTGCACACT GCTGATACTG AGCCAGCAAT TACGCCATTC
TCATTAACTG AATTGGGCTT GGATGCTGAT GAAATTGCTG ATTACAATGC CATGGGCAAT
CTCAGCCAAC CGCAAACCCA AGTCGATGAA GAATTGGAAA TTAAGCCCTT CTCGCTGACT
GAACTTGGCT TGAGCGACGA TGAAATTGCC TTGCTGCAAG CTGGCGAAGA TAGCGCTTTG
CCCACCGATC CAACTAACGA TGAATCGGGC TTAACCCCAT TTTCCTTAAA TGAATTTGGT
TTTGACACGC CTGCGACTAA CGATGATCAA GGCTTCAACT TCGATGAGCC AAGTATCACG
CCATTCTCGC TCGATAATTT AGGGCTTGAT CCTGAGGAGC AAGCGCTTTA TTCAGGCGAG
TTCAATCCAG CACCTGTGGC TGAACCCACG CCCAAGGTGG AAGAAGAGCC AAATATGACT
CCCTTCTCCT TGACCGATTT GGGACTTGAT GCTGATGAAA TTGCTCAATT TGAAGCAATG
AATCAAGCAC CAGCTGCCAT CGATGATGAT GGTTTTGATG GTGGTTTGCA GCCATTCTCG
CTCGATGATT TGGGCTTTGA TCAAGAACCT CAAGCCTATG AAGAGCCAGT GCGCGAACTA
AGTGATAGCT CACAACCCTT CTCCTTGAAC GATATTGGTT TATCGGCAGA GGAAATTGCG
GCAATCGAGC AAGCTGGCCA AAATCAAAGC GATGATCCAA TCTTTGATGC GCTTTTGGGA
ATTGGTCAAC AGCAAGGCTA TGTCGATTTG ACCGATATCA TCAATCAATT CGATGATCCT
GAATCGCAAA CCGAGGAAAT CGACCGCATC GCTTTGGCCT TGCACGATAA TGGTATTCAA
ATTCGCGATG GCGATGAAGT GATTAATATG GACGAGGAGT TCTCTGGTGA CGAGGCTGAA
GCCTACGAAA CCGAAGAACC ACTTGAAAAC TTCATTGCTG GCGATTTCGA CCAGCCAACT
GCTGAAGTCG AGCCAGAAAT GACTCCGTTC TCGTTGACCG ATTTGGGCTT GAGTGCCGAA
GAAATCGCGA TGTTGAATGG CGAAACCAGC GAAGCGCCGA CTGAAGAGCC AGCACCATTC
TCCTTCGATA ATTTCGAGCT TGAGCAACCC AGTGCCGAAG TCGAGCCGGA AATGACTCCG
TTCTCGTTGA CCGATTTGGG CTTGAGTGCC GAAGAAATTG CGATGTTGAA TGGCGAAACC
AGTGAGCCTG CTGCCGAAGA ACCAGCACCA TTCTCCTTCG ATAACTTTGA GCTTGAGCAA
CCCGCAACGG ACGCTGAGCC AGAAATGACT CCGTTCTCGC TGACCGATTT GGGCTTGAGC
GCCGAAGAAA TTGCCATGTT GAATGGTGAA ACCAGCGAAG CGGCGGCAGA AGAACCAGCG
CCATTCTCCT TCGATAATTT CGAGCTTGAC CAACCCGCAA CGGATGCTGA GCCAGAAATG
ACTCCGTTCT CGCTGACCGA TTTGGGCTTG AGCGCTGAAG AAATCGCCAT GTTGAATGGC
GAAACCAGCG AAGCGGCGGC AGAAGAACCA GCACCATTCT TCTTCGATAA TTTCGAGCTT
GAGCAACCCG CAACGGACGC TGAGCCAGAA ATGACTCCGT TCTCGCTGAC CGATTTGGGC
TTGAGCGCCG AAGAAATTGC GATGTTGAAT GGCGATACCA GCGAAGCGGC GACCGAAGAG
CCAGCACCAT TCTCCTTCGA TAATTTCGAG CTTGACCAAC CTGCAACGGA TGCTGAGCCA
GAAATGACTC CGTTCTCACT GACCGATTTG GGCTTGAGCG CTGAAGAAAT CGCGATGTTG
AATGGCGAAA CCAGCGAAGC AGCGGCGGAA GAACCAGCAC CATTCTCCTT CGATAATTTC
GAGCTTGACC AACCCGCAAC GGATGCTGAG CCAGAAATGA CTCCGTTCTC GTTGACCGAT
TTGGGCTTGA GCGCCGAAGA AATCGCAATG CTGAATGGTG AAACCAGCGA AGTGGCGGCG
GAAGAACCAG CACCATTCTC GTTTGATAAT TTCGAACTTG AGCAACCAAG TGCGGAAGCC
GAGCCAGAAA TGACTCCGTT CTCGCTGACC GATTTGGGCT TGAGCGCCGA AGAAATCGCG
ATGCTGAATG GCGAAACGAG CGAAGCGGCG GCAGAAGAAC CAGCACCATT CTCCTTCGAT
AATTTTGAGC TTGACCAACC CGCAACGGAC GCTGAGCCAG AAATGACTCC GTTCTCGTTG
ACCGATTTGG GCTTGAGTGC CGAAGAAATT GCCATGCTGA ATGGTGAAAC CAGCGAAGCG
GCGGCAGAAG AACCAGCTCG ATTCGCATTC GATGATTTTG AGTTTGAGCA ACCAAGTGCC
GAAGCTGAGC CAGAAATGAC TCCGTTCTCG CTGACCGATT TGGGCTTGAG CGCCGAAGAA
ATTGCTGCTC TGGAAGGCAC AAGCGCACCT GAACCTGAGA TTGAAGCTGA AGAGCCTGAT
ATGTCGCCCT TCACCTTTGA TCAACTAGGC TTGAGCGCCG AAGAAATTGC CGCATTGGAA
GGTAACGAGG CTCCAGCAGC CGAGCCAGCC AGCGAGCTAG AGCCTGATCT CACGCCATTC
TCGCTAGCCG ATTTGGGCTT GAGCGATGAT GAAATTGCTT CATTGCAACA AGGCGACGAT
GATCGGAGCT TGAAGCTGAG CGAAGAAGAA TTGATGGGCA TCGATTTTGC TTTGCCAAGC
GCCGAGCCAG AACCAGAGCC AGTGGTCGAA GCAGCGCCAG CCGAACCCGA AATGACCCCA
TTCTCGTGGG AAGATTTGGG CTTGAGCGAC GACGAAATTG CCATAATTGA ATCGCCAGCC
GAGCCAGTGG TTGAGGTTAC GCCAGTTGTG GTCGTGCCAA CGCCGCCTGC AATTGTCGAA
ACCCCACCAG CAATTAGCGC TACACCAACG CCAAAAGCTG AGCCAGAGGC TGATAACAAA
CGTGCTCCGT TGTATCCAGT TTCATCACGG CCACGTGAAG AAGAACAACG CCCACGCGCA
CCGTTGTATA ACGTCTCGCC ACGCCGTGAA CCAAAACCAG CGGCTGAAAC GCCAGTGGTT
GAAACCTCAC CCGTGGTGGC TCAAACCCCA ACACCAGTAG CAGTAGCACC TGTGGCTAGC
CCAACAGTTA CGCCAAGCAG TGGTGGGGCC AGCGGCGATG GCCCAGACTT TAGCGAATAC
TACCAACAAC TTGAGGCCGA CCCAAACAAC CATGGCTTGC GAATGGCCTT GGCGCGGATG
ATTAGTCAGA CCGCCTCGGT TGATCAAGCC TTAAACGAAT ACAAACGGCT GATTAAACAA
AATCAACTGA TGGATCAAGT AGTTGATGAT CTGCAAGATC TGATTGAGTC GCACGATGAC
CCAGGCTTGC TCCAACGGCT GCACCGTGCT TTAGGTGATG CCTATTCTAA GCAAGGACGC
TGGCGTGAAG CGATGGATGA GTATGGCTGG GTGCTAAATA AACCACGTCG TTAA
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| Protein sequence | MALTTIQALY DEARSALETG KEERAIGASE HLLESFPYYL EAYRILGESY LNRQDLAKAV
EAFERVLRSD PENIPVHVGL GVTYERQGNL AAAIREFEQA FEIKPDLPEL RSQVLRLYTE
AWGSENARIL LKKAGLGRMY VRGRRFDKAI QEFNDVLADD PKRVDIAVAL AEALWRNGQE
AEAAEVASDI LRDYPDMLKA NLILGYHLLA AGDPKGRKLW QHAQQLDPSQ GVAYALFDGM
LPPVEAPDTK IEAFDEAAWK AKKAEKAEKE RLAREAAEQA ERDRLAAEQA SKAPAASWLA
EVEAAPVAVG VAANADDDFL RSLLFGDFGA APASPAPTAV AIAEPEYDVD FNLDDLGLDL
QPFSLDEVDD TPSNKAPTPA PEPVVAPTKP APEPVVASND DFELPGDLTP FSFGDWDESS
IDDIPGTGAD TGKLPEQLQP FSLENFDDVQ PETSSKAQDD DLALPNTLKP FSLDELSFDS
IDTPSEPSMP FSRDLPSFPD TDQESGGFSW QQPRSRSRSI FGAQPEPEFN QDEEDDAGIF
NRMVIKKQTQ TLPPLVEPVY DPADSDDEAM NFFSNDDVDL RNYDEHDLHT ADTEPAITPF
SLTELGLDAD EIADYNAMGN LSQPQTQVDE ELEIKPFSLT ELGLSDDEIA LLQAGEDSAL
PTDPTNDESG LTPFSLNEFG FDTPATNDDQ GFNFDEPSIT PFSLDNLGLD PEEQALYSGE
FNPAPVAEPT PKVEEEPNMT PFSLTDLGLD ADEIAQFEAM NQAPAAIDDD GFDGGLQPFS
LDDLGFDQEP QAYEEPVREL SDSSQPFSLN DIGLSAEEIA AIEQAGQNQS DDPIFDALLG
IGQQQGYVDL TDIINQFDDP ESQTEEIDRI ALALHDNGIQ IRDGDEVINM DEEFSGDEAE
AYETEEPLEN FIAGDFDQPT AEVEPEMTPF SLTDLGLSAE EIAMLNGETS EAPTEEPAPF
SFDNFELEQP SAEVEPEMTP FSLTDLGLSA EEIAMLNGET SEPAAEEPAP FSFDNFELEQ
PATDAEPEMT PFSLTDLGLS AEEIAMLNGE TSEAAAEEPA PFSFDNFELD QPATDAEPEM
TPFSLTDLGL SAEEIAMLNG ETSEAAAEEP APFFFDNFEL EQPATDAEPE MTPFSLTDLG
LSAEEIAMLN GDTSEAATEE PAPFSFDNFE LDQPATDAEP EMTPFSLTDL GLSAEEIAML
NGETSEAAAE EPAPFSFDNF ELDQPATDAE PEMTPFSLTD LGLSAEEIAM LNGETSEVAA
EEPAPFSFDN FELEQPSAEA EPEMTPFSLT DLGLSAEEIA MLNGETSEAA AEEPAPFSFD
NFELDQPATD AEPEMTPFSL TDLGLSAEEI AMLNGETSEA AAEEPARFAF DDFEFEQPSA
EAEPEMTPFS LTDLGLSAEE IAALEGTSAP EPEIEAEEPD MSPFTFDQLG LSAEEIAALE
GNEAPAAEPA SELEPDLTPF SLADLGLSDD EIASLQQGDD DRSLKLSEEE LMGIDFALPS
AEPEPEPVVE AAPAEPEMTP FSWEDLGLSD DEIAIIESPA EPVVEVTPVV VVPTPPAIVE
TPPAISATPT PKAEPEADNK RAPLYPVSSR PREEEQRPRA PLYNVSPRRE PKPAAETPVV
ETSPVVAQTP TPVAVAPVAS PTVTPSSGGA SGDGPDFSEY YQQLEADPNN HGLRMALARM
ISQTASVDQA LNEYKRLIKQ NQLMDQVVDD LQDLIESHDD PGLLQRLHRA LGDAYSKQGR
WREAMDEYGW VLNKPRR
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