Gene Haur_4054 details

Gene Information

• Locus tag: Haur_4054
• ID: 5735912
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Herpetosiphon aurantiacus ATCC 23779
• Kingdom: Bacteria
• Replicon accession: NC_009972
• Strand: -
• Start bp: 5171495
• End bp: 5174866
• Gene Length: 3372 bp
• Protein Length: 1123 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 641281205
• Product: putative signal transduction histidine kinase
• Protein accession: YP_001546814
• Protein GI: 159900567
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4585] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATACA TAATGCGTGT AATTAGCATC TTTTTTGGAT GTTTTGTTGT CATCTCAATG 
GCAATTTCCG TTCGAACTAG CTTAAACACG ATTGATGATC CAGCGCTTGA ATTAATTACC 
TATTGGTCTG CAATAAACAA TTGTAATGAA ATTCATGCTA TAACCCCAGC TGAATGGATG 
CCCATTGCCC AAGAAATTGT TGCACCAGGC GATTGTATTC TCAGTGTTTC AGGTTATGGT 
TATAATTCGC CAGAAATGAT TGATCATCTG AAGAAGAAAC TAGAGCTAGA TTATGCTAAT 
CGCTTTGTAC CGGTAGAAAT TAGACGCGAT CAATCTCAGT TTACCGTTTA TCTACCAATC 
ACAAAAATTA GTATTCATCA TATTTTACAA ATCTATTTAG CAATCATCCT TACCGCAGCA 
TTACTATGGA TTCTAGGTAT TATTGTATTA ATTTCAAACC CAGATAAGGA AAATAATATT 
GTATTTGGTT ATATTCTTTG GTTTCTTGCT TTAGCTATTA CAAGTATTCG GCATAGAGTA 
CCAGATTTTG GCGAATATCT TACCCTTGTT GCAACTGTAG TGCCATTAGC ACTACTTGGT 
GGAAGTTTCT TTCATTTAGG GTATATCTTT CCAGTAAAGA TTGAGCGTTA TCATGGGTTT 
AAATATGTGC TGTATATCCC TTCGCTCTTT AGTATTGCTT TATATACCTA TGTTATTATT 
AATATTGCCT CAGGTAAAAG TAATATTCCT ACAATTTCCA ATCAAGCCAA CTATATCATT 
GCGACCATAT TTATCATCGG ATTTAGCTTT ACATTAATTC GTTGGGCATA TCTCTGGATC 
ACCTATCGCC ATCAAACTAA ATCGAAAATT ATTTTGCAAG CTAAAATTGC GTTTACCACT 
TGGTTAATAG GTGGATTATT CAACGTTATA TTGATGATTG TGTATCAGGA ATTTAATTTA 
AAATTACCAA TAATCGGGAA ATCAATATTT TTTGGCTTAT TTCTATTAGT CATTCCGGCA 
GCTGGGACTG CATTTACGCT ATTACGTTAT GAATCAGTTC ATGCAAAACG TTCATTTAGC 
TTAGATTTAT TAATGATAAT TTTGATTAGT GCGGTTATTG TGGATATTTC AATCCTTATT 
AATAGTTATA TTGAAATTAA TGGAATTATA TTTATCAATA TCTTCTTTGT TGCAGTAATT 
ACCTCAATTT TCTGGTATAT CGACAACCCA TTTCGTAGAA TATTTGAAAA ATATTTCCTG 
CGCCATCAAA ATGATGCTGA AATATTGTTT GGCTTGTTAA ACCATCTTGA TATCACTAAA 
GATATTCATT CAGCAATCTA CTCATCAATT GATTATTTGA CTAAGCAATT AGAGATAGAA 
TCTTTGCGTT TTGTGATCGA AAAGAATATT ATCAAAACAT CTGAACATTT TTATATTATG 
GAAAACGAGC CAATTGATTT ATTTTTTGAG CACAATTCTG AAGCAGGATC GTTTTCAAAC 
TCGCTCAGTA AGTTCTATAA ACATCGAGAA ATTGTGTATG ACAATAACAA CAATCAAATT 
GGATACTTAT ACCTTGGGCC AAAAATTACC AATGAAGATT TTGATACCAA AGACTATGAG 
CTTATTCGAT TAATCACTCA ATATTTGAGT TGGTTTGTGC TGGCGAAAAA TCAGTTAATC 
TTAATCAACC AAATTATCCA AAGGATTATC AAGGCGCGTG ATAGTATTTT TGGTGATATC 
AATCATGTTA TTCACGACGA TATTTTAGGC AAACTAAACT CGGTTACGCT TGGCATTGAT 
ATGATCTGTG AGTTTGATCA GATTACACCT GATACAAAAG CTCGACTTGT TCAATACAAA 
GCTTCGACCG ACCAAACAGT AGAAATCCTG AAACGCTTTA TCATTCAAAA ACAAATTGCA 
ATTCCAGGTG TAAAAAAGAA TTTCTTACCA GAAATTCATC GGCTAATTCG TGAGCTTATT 
CAACATCAAC AAATCGAACT TCATTGGGAA ATGCCACCAA GAGATGATTT GAATCTTTGG 
AATAATCTAT CAATTGACAA AAAACGTGAT ATTTTTCGGA TTATTCATTC AGCAGTTGCA 
AATACCCTTG CTTATGCTCA AGCAAGAAAT ATTAATATTA CATTTAGTAA AAATAATGCT 
ATGTTATCCT TGTCAATCAT TGATGATGGT GTTGGTTTTG AGATTGATAA AGATATTAAA 
CAAAATAGCA CTGGCTTGAT GACGATGTAT GAGCGCACAA AAAATATTGA TGGTATCATC 
GAAATACGTT CGATTATCGA TCAAGGTACA ACAATCGAGT TATCAATTCC AATGGAAATA 
GCTATTCCGA CTCTGATCCA TGAACAATCA ACTGAGCAAG CAACTCCATT AATTAAAAAG 
CCCAAGCTAG AAATGCTCCA TTCAGATATT CAAGTCAAAG AACAATCCAA GAAATATAAT 
TTAGCATTAA TCTGTATGGC ATTTATGCTT GGCATTGGCA TAACATTTAT TTTAAAAACC 
GATTTATTAT CGCTAGAAAA AGTAGCCTCA CAACCAAAAG TCTGGTTTGA TGTTGATGTT 
CGTTTAGTTA ATCAACAAGC TGAGAATGGT GAATTTTGGC GAACTCGTTT ATTTGATGGT 
AGTCGTTTTA TCCAAAATTA TGATACTATC GCCGTCGGGA CAAGAGTAAC AATGACATTT 
AGTTTAAGAA ACCATAAGGC TAAACCAGCT TTACTCCGAA ACTTAGTCGC AGGGGCACGT 
GGTCCTAACG TCTTAGAACA AGGCTGGAGT GCCTCCACAA TGGATTTTCC TTCAGTTCAG 
AATATTCTGA TAGAACCATA CAAAACCTAT ACATTTACGG CTAGCCGAAT TTATGATCAG 
CCAGGTAATT ATTTTCTAGA GCCAATGTTT GAAGATGAGG CTGGTGATTG GCGAGCTATT 
GCTGACTTTA CAAGAATTAC GTTTTTTGTG GCCGATTTAA CTAATCCAAT TGTTAGTGAA 
GTCGTTGAGG TTGCTGCTGA TCGTGATTGG AAATATACGC CAATCTATGT TCAACCTGGC 
GATACAATCG AATTTATAGC TCAAAAAGGT TCTTGGACAA CTGATATGAA TAGTCTACCA 
TTCGTTAATG CTGATGGGTA TCAAAACCAG CATTACGATT GGACAACACT GCCAGCTGCA 
AATTATGGGC AATTAATTGG CTCAATTGGC GATTGGAAGT TTGCAATTGG CAAAGAATCG 
AGCATTCAAG CCCCGAACTA TCAGGGAATC TTACGACTTG GAATTAATGA TGCGCATTGT 
GCCGATGTCT GTTTGAGCGA TAATCGTGGC TCGATGATGG TTGCTATTGT GGTCAGACGC 
GCTAAAAAAT AA 

 

Protein sequence

MKYIMRVISI FFGCFVVISM AISVRTSLNT IDDPALELIT YWSAINNCNE IHAITPAEWM 
PIAQEIVAPG DCILSVSGYG YNSPEMIDHL KKKLELDYAN RFVPVEIRRD QSQFTVYLPI 
TKISIHHILQ IYLAIILTAA LLWILGIIVL ISNPDKENNI VFGYILWFLA LAITSIRHRV 
PDFGEYLTLV ATVVPLALLG GSFFHLGYIF PVKIERYHGF KYVLYIPSLF SIALYTYVII 
NIASGKSNIP TISNQANYII ATIFIIGFSF TLIRWAYLWI TYRHQTKSKI ILQAKIAFTT 
WLIGGLFNVI LMIVYQEFNL KLPIIGKSIF FGLFLLVIPA AGTAFTLLRY ESVHAKRSFS 
LDLLMIILIS AVIVDISILI NSYIEINGII FINIFFVAVI TSIFWYIDNP FRRIFEKYFL 
RHQNDAEILF GLLNHLDITK DIHSAIYSSI DYLTKQLEIE SLRFVIEKNI IKTSEHFYIM 
ENEPIDLFFE HNSEAGSFSN SLSKFYKHRE IVYDNNNNQI GYLYLGPKIT NEDFDTKDYE 
LIRLITQYLS WFVLAKNQLI LINQIIQRII KARDSIFGDI NHVIHDDILG KLNSVTLGID 
MICEFDQITP DTKARLVQYK ASTDQTVEIL KRFIIQKQIA IPGVKKNFLP EIHRLIRELI 
QHQQIELHWE MPPRDDLNLW NNLSIDKKRD IFRIIHSAVA NTLAYAQARN INITFSKNNA 
MLSLSIIDDG VGFEIDKDIK QNSTGLMTMY ERTKNIDGII EIRSIIDQGT TIELSIPMEI 
AIPTLIHEQS TEQATPLIKK PKLEMLHSDI QVKEQSKKYN LALICMAFML GIGITFILKT 
DLLSLEKVAS QPKVWFDVDV RLVNQQAENG EFWRTRLFDG SRFIQNYDTI AVGTRVTMTF 
SLRNHKAKPA LLRNLVAGAR GPNVLEQGWS ASTMDFPSVQ NILIEPYKTY TFTASRIYDQ 
PGNYFLEPMF EDEAGDWRAI ADFTRITFFV ADLTNPIVSE VVEVAADRDW KYTPIYVQPG 
DTIEFIAQKG SWTTDMNSLP FVNADGYQNQ HYDWTTLPAA NYGQLIGSIG DWKFAIGKES 
SIQAPNYQGI LRLGINDAHC ADVCLSDNRG SMMVAIVVRR AKK