| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1716 |
|---|
| Symbol | |
|---|
| ID | 5733603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 1996244 |
|---|
| End bp | 1998481 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641278858 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001544487 |
|---|
| Protein GI | 159898240 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAGG ATCGAGCGTT TATTGAGGTG TATGGCGCAC GCGAAAACAA CCTCAAAAAT
ATTTCCTTGA ATATTCCAAA ACAGCGGGTG ACAGTCTTTA CCGGAGTCTC TGGTTCGGGC
AAATCGTCGT TGGTGTTTGA TACGATTGCC GCTGAGGCTC AACGCCAACT CAATGAAACC
TTTACCTTTT TTGTGCAAGG CTTTTTGCCG CACTATGGCC AGCCTGATGT CGAGCGGATC
GAGCATCTCA ACTCGCCGAT TATCATCGAT CAAAAGCGGG TTGGCGGTGG TTCGCGCTCA
ACCGTCGGAA CCTACACAGA TATTGCGGTG TTGCTGCGCT TGTTGTTCTC GCGGATTGGT
CAGCCCTACG TTGGGCCTGG CTATGCTTTT TCGTTCAACA CGCCGCAGGG TATGTGCCCC
GAATGTGAAG GCATTGGCAA AACGGTTCAG CTTGATATGG ATAAATTGCT TGACCGCAGC
AAATCGCTGA ATGAAGGTGC GATTTTGCAC CCCGAATTCA AGGTTGGCAA ATGGATGTGG
AAGATGTATC CGCTGTCTGG TTTGTTCGAT AACGATAAGC CGATTCAGGA TTATAACGAA
CAGGAATTGC AAGCATTTTT GTATGGCGCT GATCTTAAGG TTTCGTGGGG CGAATTTAGC
TCGAAATATG AAGGTTTGCT GGAACGTTTC GAGCGTATGT ACCTCAAAAA AGATGCAGCA
GCCATGTCGG ATCGCAATCG GGCCGTGTTT GAGCAATTTA CCTCTTCACA AATCTGCCCA
GTTTGCCATG GTGGGCGTTT GACTCAAGCC GCGCTCAATT GTCGGATTGC TGGGCGTAAC
ATTGCCGAAT TAGCCGATTT TGAAGCGACT GATTTGATTA GCTTTTTGGC TGATGTTACT
GATCCGATTG GTGATCGGGT GGCGGCCAAG TTGTTGGAGC GCATGCAACA GTTGGTCGAT
ATTGGCTTGG GCTATTTGAG CTTGAGCCGC GAAACCTCGA CGCTCTCTGG GGGCGAATCT
CAGCGCGTCA AAATGATTCG GCATCTTGGC AATAGCTTAA CTGAAATGCT CTATATTCTC
GATGAGCCAA GTGTGGGCTT GCATGCGCGT GATGTGGCGC GGCTGAATAA TTTATTGCAA
CAGTTGCGCG ATAAGGGCAA TACGGTGCTA GTGGTTGAGC ATGATCCCGA TGTGATTGCA
ATTGCCGACC ATATTGTCGA TATTGGGCCA CGCGCGGGCG TGCACGGCGG CGAGGTTGTG
TTTGAAGGCA GCTATGCCGA TCTCAAACGT TCAAATACCT TAACTGGCAG CTATTTGCAA
CAAGTAGTGC CAACCAAACA GCATTCGCGT CAGCCAACTG GCTACTTGCC GATTGTTAAT
GCCAACCTGC ATAACCTTAA AAACGTCAAT GTCAATATTC CAACGGGCGT GCTGACCGTG
GTGACAGGTG TGGCCGGATC AGGCAAAAGC ACCTTAATTA ATGAAGTCTT TTTGAGCCAA
CACCCCAATG CGATTGTGAT CGATCAATCA CGGGTAACGG CTAATAGCCG TTCGGCTCCG
GCCACCTATA CCGGAATTAT GGATGATATT CGCCAGACCT TTGCTAAGGC CAATGGCGTG
AGCGCTTCGT TATTCAGCTT CAACTCAACT GGCAGTTGCG ATAATTGTAA TGGTTTGGGC
TTAGTCTACA CCGATTTAGC CTTTATGGAA GGAATTTCCT CGACCTGTGA AATTTGCGAA
GGCAAGCGTT TCAAAGCCGA AGTGCTGGAA TATCGGCTGC GCGGCAAATC GATCAGCGAT
GTGTTGGATA TGACTGCCGA GGAAGCACTC GATTTCTTTA ACGAAAAGAA GATCAAGCCT
GTGCTCCAGG CTATGAATGA TGTTGGCTTG AGCTATTTGA AACTTGGTCA ACCACTCAGC
ACGATATCGG GTGGTGAGGG TCAACGGCTC AAATTGGCGA CCGAACTCCA CAAAAAGGCC
AGCGTTTATG TGATGGACGA GCCAACCACG GGTTTGCATC GCTCGGATAT TGGGCTGCTG
ATGGGGATCA TTGATCGTTT GGTTGATCTC AAGAATACCG TGATTCTGAT CGAACATCAC
TTGGATATTA TTCGTCAGGC CGATTGGATT ATCGACATTG GGCCTGAGGG CGGTAGCGCT
GGTGGCGAGA TTATTTTTGA AGGGCCACCC ATGGCCTTGA AAACTTGCCA ACGCAGCATT
ACCGCCAAGT TTCTCTAA
|
|---|
| Protein sequence | MMQDRAFIEV YGARENNLKN ISLNIPKQRV TVFTGVSGSG KSSLVFDTIA AEAQRQLNET
FTFFVQGFLP HYGQPDVERI EHLNSPIIID QKRVGGGSRS TVGTYTDIAV LLRLLFSRIG
QPYVGPGYAF SFNTPQGMCP ECEGIGKTVQ LDMDKLLDRS KSLNEGAILH PEFKVGKWMW
KMYPLSGLFD NDKPIQDYNE QELQAFLYGA DLKVSWGEFS SKYEGLLERF ERMYLKKDAA
AMSDRNRAVF EQFTSSQICP VCHGGRLTQA ALNCRIAGRN IAELADFEAT DLISFLADVT
DPIGDRVAAK LLERMQQLVD IGLGYLSLSR ETSTLSGGES QRVKMIRHLG NSLTEMLYIL
DEPSVGLHAR DVARLNNLLQ QLRDKGNTVL VVEHDPDVIA IADHIVDIGP RAGVHGGEVV
FEGSYADLKR SNTLTGSYLQ QVVPTKQHSR QPTGYLPIVN ANLHNLKNVN VNIPTGVLTV
VTGVAGSGKS TLINEVFLSQ HPNAIVIDQS RVTANSRSAP ATYTGIMDDI RQTFAKANGV
SASLFSFNST GSCDNCNGLG LVYTDLAFME GISSTCEICE GKRFKAEVLE YRLRGKSISD
VLDMTAEEAL DFFNEKKIKP VLQAMNDVGL SYLKLGQPLS TISGGEGQRL KLATELHKKA
SVYVMDEPTT GLHRSDIGLL MGIIDRLVDL KNTVILIEHH LDIIRQADWI IDIGPEGGSA
GGEIIFEGPP MALKTCQRSI TAKFL
|
|---|
| |